Curated BLAST for Genomes


Curated BLAST

Searching in Bacteroides thetaiotaomicron VPI-5482 (Btheta)

Found 11 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Bacteroides thetaiotaomicron VPI-5482, or try another query

BT4474: conserved hypothetical protein (NCBI ptt file)
is similar to:

KAMA_CLOSU / Q9XBQ8: L-lysine 2,3-aminomutase; LAM; KAM; EC from Clostridium subterminale
kamA / Q9XBQ8: lysine 2,3-aminomutase (EC from Clostridium subterminale

27% id,
66% cov

ABLA_METMA / Q8PYC9: L-lysine 2,3-aminomutase; LAM; EC from Methanosarcina mazei
Q8PYC9: lysine 2,3-aminomutase (EC from Methanosarcina mazei

24% id,
59% cov

KAMA_FUSNN / Q8RHX4: L-lysine 2,3-aminomutase; LAM; KAM; EC from Fusobacterium nucleatum

30% id,
36% cov


The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory