Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Paraburkholderia bryophila 376MFSha3.1 (Burk376)

Found 50 curated entries in PaperBLAST's database that match '1.1.1.25' as complete word(s).

These curated entries have 36 distinct sequences.

Running ublast with E ≤ 0.01

Found 11 relevant proteins in Paraburkholderia bryophila 376MFSha3.1, or try another query

H281DRAFT_01679: shikimate dehydrogenase (EC 1.1.1.25) is similar to:	PaperBLAST
Q88IJ7: shikimate dehydrogenase (EC 1.1.1.25) from Pseudomonas putida	65% id, 100% cov
Q88RQ5: shikimate dehydrogenase (EC 1.1.1.25) from Pseudomonas putida	50% id, 97% cov
AROE_ECOLI / P15770: Shikimate dehydrogenase (NADP(+)); SD; SDH; EC 1.1.1.25 from Escherichia coli AroE / b3281: shikimate dehydrogenase (EC 1.1.1.25) from Escherichia coli aroE / P15770: shikimate dehydrogenase (EC 1.1.1.25) from Escherichia coli P15770: shikimate dehydrogenase (EC 1.1.1.25) from Escherichia coli	46% id, 99% cov
AROE_VIBCH / Q9KVT3: Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Vibrio cholerae	45% id, 97% cov
A0A1K3RIC7: shikimate dehydrogenase (EC 1.1.1.25) from Mycobacterium tuberculosis	44% id, 97% cov
AROE_HAEIN / P43876: Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Haemophilus influenzae P43876: shikimate dehydrogenase (EC 1.1.1.25) from Haemophilus influenzae	42% id, 98% cov
CCNA_00003: shikimate dehydrogenase (EC 1.1.1.25) from Caulobacter crescentus	35% id, 94% cov
AROE_GEOKA / Q5KWX7: Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Geobacillus kaustophilus	33% id, 98% cov
AROE_THET8 / Q5SJF8: Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Thermus thermophilus Q5SJF8: shikimate dehydrogenase (EC 1.1.1.25) from Thermus thermophilus	35% id, 94% cov
AROE_HELPY / P56119: Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Helicobacter pylori	35% id, 90% cov
AROE_HELPX / Q56S04: Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Helicobacter pylori Q56S04: shikimate dehydrogenase (EC 1.1.1.25) from Helicobacter pylori	35% id, 90% cov
AROE_STAEQ / Q5HNV1: Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Staphylococcus epidermidis Q5HNV1: shikimate dehydrogenase (EC 1.1.1.25) from Staphylococcus epidermidis	31% id, 95% cov
AROE_AQUAE / O67049: Shikimate dehydrogenase (NADP(+)); SD; SDH; EC 1.1.1.25 from Aquifex aeolicus O67049: shikimate dehydrogenase (EC 1.1.1.25) from Aquifex aeolicus	31% id, 91% cov
Q88K85: shikimate dehydrogenase (EC 1.1.1.25); quinate/shikimate dehydrogenase (EC 1.1.1.282) from Pseudomonas putida	28% id, 91% cov
A4QB65: shikimate dehydrogenase (EC 1.1.1.25); quinate/shikimate dehydrogenase (EC 1.1.1.282) from Corynebacterium glutamicum	27% id, 93% cov
More...

H281DRAFT_03216: shikimate dehydrogenase (EC 1.1.1.25) is similar to:	PaperBLAST
Q88K85: shikimate dehydrogenase (EC 1.1.1.25); quinate/shikimate dehydrogenase (EC 1.1.1.282) from Pseudomonas putida	59% id, 99% cov
A4QB65: shikimate dehydrogenase (EC 1.1.1.25); quinate/shikimate dehydrogenase (EC 1.1.1.282) from Corynebacterium glutamicum	50% id, 99% cov
AROE_THET8 / Q5SJF8: Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Thermus thermophilus Q5SJF8: shikimate dehydrogenase (EC 1.1.1.25) from Thermus thermophilus	37% id, 93% cov
AROE_METJA / Q58484: Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Methanocaldococcus jannaschii aroE / Q58484: shikimate dehydrogenase monomer (EC 1.1.1.25) from Methanocaldococcus jannaschii	35% id, 95% cov
AROE_GEOKA / Q5KWX7: Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Geobacillus kaustophilus	35% id, 95% cov
AROE_LISMO / Q8Y9N5: Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Listeria monocytogenes	33% id, 97% cov
AROE_STAEQ / Q5HNV1: Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Staphylococcus epidermidis Q5HNV1: shikimate dehydrogenase (EC 1.1.1.25) from Staphylococcus epidermidis	32% id, 94% cov
O27957: shikimate dehydrogenase (EC 1.1.1.25) from Archaeoglobus fulgidus	31% id, 94% cov
AROE_AQUAE / O67049: Shikimate dehydrogenase (NADP(+)); SD; SDH; EC 1.1.1.25 from Aquifex aeolicus O67049: shikimate dehydrogenase (EC 1.1.1.25) from Aquifex aeolicus	31% id, 94% cov
A4QEK4: shikimate dehydrogenase (EC 1.1.1.25) from Corynebacterium glutamicum	27% id, 93% cov
DHQSD_ARATH / Q9SQT8: Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic; DHQ-SDH protein; DHQase-SORase; Protein EMBRYO DEFECTIVE 3004; EC 4.2.1.10; EC 1.1.1.25 from Arabidopsis thaliana AT3G06350 / Q9SQT8: shikimate dehydrogenase (EC 1.1.1.25; EC 4.2.1.10) from Arabidopsis thaliana	31% id, 47% cov
ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae	24% id, 17% cov
More...

H281DRAFT_06291: shikimate dehydrogenase (EC 1.1.1.25) is similar to:	PaperBLAST
Q88RQ5: shikimate dehydrogenase (EC 1.1.1.25) from Pseudomonas putida	55% id, 99% cov
AROE_VIBCH / Q9KVT3: Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Vibrio cholerae	51% id, 97% cov
Q88IJ7: shikimate dehydrogenase (EC 1.1.1.25) from Pseudomonas putida	47% id, 98% cov
AROE_ECOLI / P15770: Shikimate dehydrogenase (NADP(+)); SD; SDH; EC 1.1.1.25 from Escherichia coli AroE / b3281: shikimate dehydrogenase (EC 1.1.1.25) from Escherichia coli aroE / P15770: shikimate dehydrogenase (EC 1.1.1.25) from Escherichia coli P15770: shikimate dehydrogenase (EC 1.1.1.25) from Escherichia coli	46% id, 100% cov
A0A1K3RIC7: shikimate dehydrogenase (EC 1.1.1.25) from Mycobacterium tuberculosis	44% id, 100% cov
AROE_HAEIN / P43876: Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Haemophilus influenzae P43876: shikimate dehydrogenase (EC 1.1.1.25) from Haemophilus influenzae	41% id, 100% cov
CCNA_00003: shikimate dehydrogenase (EC 1.1.1.25) from Caulobacter crescentus	38% id, 93% cov
O27957: shikimate dehydrogenase (EC 1.1.1.25) from Archaeoglobus fulgidus	35% id, 98% cov
AROE_GEOKA / Q5KWX7: Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Geobacillus kaustophilus	35% id, 95% cov
AROE_THET8 / Q5SJF8: Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Thermus thermophilus Q5SJF8: shikimate dehydrogenase (EC 1.1.1.25) from Thermus thermophilus	34% id, 94% cov
AROE_HELPY / P56119: Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Helicobacter pylori	34% id, 90% cov
AROE_HELPX / Q56S04: Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Helicobacter pylori Q56S04: shikimate dehydrogenase (EC 1.1.1.25) from Helicobacter pylori	34% id, 90% cov
AROE_AQUAE / O67049: Shikimate dehydrogenase (NADP(+)); SD; SDH; EC 1.1.1.25 from Aquifex aeolicus O67049: shikimate dehydrogenase (EC 1.1.1.25) from Aquifex aeolicus	31% id, 93% cov
AROE_STAEQ / Q5HNV1: Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Staphylococcus epidermidis Q5HNV1: shikimate dehydrogenase (EC 1.1.1.25) from Staphylococcus epidermidis	31% id, 94% cov
AROE_METJA / Q58484: Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Methanocaldococcus jannaschii aroE / Q58484: shikimate dehydrogenase monomer (EC 1.1.1.25) from Methanocaldococcus jannaschii	31% id, 92% cov
A4QB65: shikimate dehydrogenase (EC 1.1.1.25); quinate/shikimate dehydrogenase (EC 1.1.1.282) from Corynebacterium glutamicum	29% id, 94% cov
CA265_RS19745: shikimate dehydrogenase (EC 1.1.1.25) from Pedobacter sp.	27% id, 98% cov
Q88K85: shikimate dehydrogenase (EC 1.1.1.25); quinate/shikimate dehydrogenase (EC 1.1.1.282) from Pseudomonas putida	26% id, 97% cov
Q9WYI1: shikimate dehydrogenase (EC 1.1.1.25) from Thermotoga maritima	32% id, 58% cov
More...

H281DRAFT_02529: shikimate dehydrogenase is similar to:	PaperBLAST
Q88JP1: shikimate dehydrogenase (EC 1.1.1.25); quinate/shikimate dehydrogenase (EC 1.1.1.282) from Pseudomonas putida	36% id, 97% cov
O27957: shikimate dehydrogenase (EC 1.1.1.25) from Archaeoglobus fulgidus	32% id, 93% cov
Q88IJ7: shikimate dehydrogenase (EC 1.1.1.25) from Pseudomonas putida	31% id, 93% cov
A0A1K3RIC7: shikimate dehydrogenase (EC 1.1.1.25) from Mycobacterium tuberculosis	29% id, 93% cov
CCNA_00003: shikimate dehydrogenase (EC 1.1.1.25) from Caulobacter crescentus	30% id, 88% cov
AROE_THET8 / Q5SJF8: Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Thermus thermophilus Q5SJF8: shikimate dehydrogenase (EC 1.1.1.25) from Thermus thermophilus	29% id, 90% cov
AROE_VIBCH / Q9KVT3: Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Vibrio cholerae	30% id, 87% cov
Q88RQ5: shikimate dehydrogenase (EC 1.1.1.25) from Pseudomonas putida	28% id, 91% cov
AROE_HAEIN / P43876: Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Haemophilus influenzae P43876: shikimate dehydrogenase (EC 1.1.1.25) from Haemophilus influenzae	28% id, 90% cov
Q9WYI1: shikimate dehydrogenase (EC 1.1.1.25) from Thermotoga maritima	27% id, 90% cov
AROE_GEOKA / Q5KWX7: Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Geobacillus kaustophilus	27% id, 90% cov
Q88K85: shikimate dehydrogenase (EC 1.1.1.25); quinate/shikimate dehydrogenase (EC 1.1.1.282) from Pseudomonas putida	32% id, 72% cov
AROE_METJA / Q58484: Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Methanocaldococcus jannaschii aroE / Q58484: shikimate dehydrogenase monomer (EC 1.1.1.25) from Methanocaldococcus jannaschii	26% id, 89% cov
A4QB65: shikimate dehydrogenase (EC 1.1.1.25); quinate/shikimate dehydrogenase (EC 1.1.1.282) from Corynebacterium glutamicum	31% id, 75% cov
AROE_ECOLI / P15770: Shikimate dehydrogenase (NADP(+)); SD; SDH; EC 1.1.1.25 from Escherichia coli AroE / b3281: shikimate dehydrogenase (EC 1.1.1.25) from Escherichia coli aroE / P15770: shikimate dehydrogenase (EC 1.1.1.25) from Escherichia coli P15770: shikimate dehydrogenase (EC 1.1.1.25) from Escherichia coli	28% id, 74% cov
Q6PUG0: shikimate dehydrogenase (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Nicotiana tabacum	31% id, 49% cov
A0A168S2B8: shikimate dehydrogenase (EC 1.1.1.25) from Vitis vinifera	28% id, 51% cov
A0A168S2H6: shikimate dehydrogenase (EC 1.1.1.25) from Vitis vinifera	27% id, 50% cov
Q6PUF9: shikimate dehydrogenase (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Nicotiana tabacum	29% id, 46% cov
A0A168S2G5: shikimate dehydrogenase (EC 1.1.1.25) from Vitis vinifera	26% id, 50% cov
More...

H281DRAFT_05693: glutamyl-tRNA reductase is similar to:	PaperBLAST
Q88RQ5: shikimate dehydrogenase (EC 1.1.1.25) from Pseudomonas putida	26% id, 54% cov
Q88IJ7: shikimate dehydrogenase (EC 1.1.1.25) from Pseudomonas putida	27% id, 31% cov
Q6PUF9: shikimate dehydrogenase (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Nicotiana tabacum	26% id, 29% cov
DHQSD_ARATH / Q9SQT8: Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic; DHQ-SDH protein; DHQase-SORase; Protein EMBRYO DEFECTIVE 3004; EC 4.2.1.10; EC 1.1.1.25 from Arabidopsis thaliana AT3G06350 / Q9SQT8: shikimate dehydrogenase (EC 1.1.1.25; EC 4.2.1.10) from Arabidopsis thaliana	25% id, 26% cov
More...

H281DRAFT_03922: 3-phosphoshikimate 1-carboxyvinyltransferase is similar to:	PaperBLAST
ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae	41% id, 28% cov
ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans P07547: shikimate dehydrogenase (EC 1.1.1.25) from Aspergillus nidulans	41% id, 27% cov
Q6W3D0: shikimate dehydrogenase (EC 1.1.1.25) from Toxoplasma gondii	26% id, 3% cov
Q6W3D0: shikimate dehydrogenase (EC 1.1.1.25) from Toxoplasma gondii	40% id, 2% cov
More...

H281DRAFT_02006: Molybdopterin or thiamine biosynthesis adenylyltransferase is similar to:	PaperBLAST
A4QEK4: shikimate dehydrogenase (EC 1.1.1.25) from Corynebacterium glutamicum	27% id, 34% cov

H281DRAFT_05615: 3-dehydroquinate synthase is similar to:	PaperBLAST
ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans P07547: shikimate dehydrogenase (EC 1.1.1.25) from Aspergillus nidulans	38% id, 23% cov
ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae	39% id, 23% cov
Q6W3D0: shikimate dehydrogenase (EC 1.1.1.25) from Toxoplasma gondii	31% id, 6% cov
Q6W3D0: shikimate dehydrogenase (EC 1.1.1.25) from Toxoplasma gondii	40% id, 4% cov
More...

H281DRAFT_01425: NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family is similar to:	PaperBLAST
Q88K85: shikimate dehydrogenase (EC 1.1.1.25); quinate/shikimate dehydrogenase (EC 1.1.1.282) from Pseudomonas putida	30% id, 28% cov

H281DRAFT_05614: shikimate kinase is similar to:	PaperBLAST
ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans P07547: shikimate dehydrogenase (EC 1.1.1.25) from Aspergillus nidulans	32% id, 10% cov

H281DRAFT_00372: transcriptional regulator, XRE family with shikimate kinase activity is similar to:	PaperBLAST
ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans P07547: shikimate dehydrogenase (EC 1.1.1.25) from Aspergillus nidulans	30% id, 8% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

35827-37053 (frame +1) on H281DRAFT_scaffold00014.14 is similar to:	PaperBLAST
ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans P07547: shikimate dehydrogenase (EC 1.1.1.25) from Aspergillus nidulans Also see hits to annotated proteins above	37% id, 25% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory