Curated BLAST for Genomes

 

Curated BLAST

Searching in Paraburkholderia bryophila 376MFSha3.1 (Burk376)

Found 2 curated entries in PaperBLAST's database that match '1.4.3.10' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 11 relevant proteins in Paraburkholderia bryophila 376MFSha3.1, or try another query

H281DRAFT_05244: thioredoxin reductase (NADPH)
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

28% id,
36% cov

H281DRAFT_03966: Dehydrogenase (flavoprotein)
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

30% id,
30% cov

H281DRAFT_02471: 2,4-dienoyl-CoA reductase
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

31% id,
27% cov

H281DRAFT_03236: thioredoxin reductase (NADPH)
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

29% id,
24% cov

H281DRAFT_00378: glutamate synthase (NADPH/NADH) small chain
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

36% id,
19% cov

H281DRAFT_01190: NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

35% id,
19% cov

H281DRAFT_05676: hypothetical protein
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

36% id,
15% cov

H281DRAFT_01265: NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

36% id,
14% cov

H281DRAFT_03118: NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

46% id,
10% cov

H281DRAFT_06331: NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

43% id,
9% cov

H281DRAFT_00403: 2,4-dienoyl-CoA reductase (EC 1.3.1.34)
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

45% id,
8% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 9 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory