Curated BLAST for Genomes

 

Curated BLAST

Searching in Paraburkholderia bryophila 376MFSha3.1 (Burk376)

Found 6 curated entries in PaperBLAST's database that match '1.5.1.1' as complete word(s).

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Paraburkholderia bryophila 376MFSha3.1, or try another query

H281DRAFT_05357: ornithine cyclodeaminase
is similar to:
PaperBLAST

PY2CR_AZOBR / V5YW53: Delta(1)-pyrroline-2-carboxylate/Delta(1)-piperideine-2-carboxylate reductase; Pyr2C/Pip2C reductase; EC 1.5.1.1 from Azospirillum brasilense
V5YW53: 1-piperideine-2-carboxylate/1-pyrroline-2-carboxylate reductase [NAD(P)H] (EC 1.5.1.1) from Azospirillum brasilense

58% id,
96% cov

CRYM / Q14894: ketimine reductase monomer (EC 1.5.1.1; EC 1.5.1.25) from Homo sapiens

26% id,
100% cov

H281DRAFT_02928: uncharacterized oxidoreductase
is similar to:
PaperBLAST

Q4U331: 1-piperideine-2-carboxylate/1-pyrroline-2-carboxylate reductase [NAD(P)H] (EC 1.5.1.1); 1-piperideine-2-carboxylate/1-pyrroline-2-carboxylate reductase (NADPH) (EC 1.5.1.21) from Pseudomonas syringae

32% id,
95% cov

dpkA / Q88GX6: Δ1-piperideine-2-carboxylate reductase (EC 1.5.1.1) from Pseudomonas putida

31% id,
96% cov

H281DRAFT_05436: Malate/lactate/ureidoglycolate dehydrogenase, LDH2 family
is similar to:
PaperBLAST

dpkA / Q88GX6: Δ1-piperideine-2-carboxylate reductase (EC 1.5.1.1) from Pseudomonas putida

29% id,
89% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory