Curated BLAST for Genomes

 

Curated BLAST

Searching in Paraburkholderia bryophila 376MFSha3.1 (Burk376)

Found 7 curated entries in PaperBLAST's database that match '1.5.3.7' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 11 relevant proteins in Paraburkholderia bryophila 376MFSha3.1, or try another query

H281DRAFT_02574: Glycine/D-amino acid oxidase (deaminating)
is similar to:
PaperBLAST

amaA / Q88CC4: pipecolate oxidase (EC 1.5.3.7) from Pseudomonas putida

36% id,
95% cov

H281DRAFT_06337: Glycine/D-amino acid oxidase (deaminating)
is similar to:
PaperBLAST

amaA / Q88CC4: pipecolate oxidase (EC 1.5.3.7) from Pseudomonas putida

30% id,
90% cov

H281DRAFT_03219: gamma-glutamylputrescine oxidase
is similar to:
PaperBLAST

amaA / Q88CC4: pipecolate oxidase (EC 1.5.3.7) from Pseudomonas putida

31% id,
89% cov

H281DRAFT_03117: sarcosine oxidase subunit beta
is similar to:
PaperBLAST

SOX_HUMAN / Q9P0Z9: Peroxisomal sarcosine oxidase; PSO; L-pipecolate oxidase; L-pipecolic acid oxidase; EC 1.5.3.1; EC 1.5.3.7 from Homo sapiens
Q9P0Z9: L-pipecolate oxidase (EC 1.5.3.7) from Homo sapiens

26% id,
98% cov

PIPOX / Q8N6Z6: L-pipecolate oxidase (EC 1.5.3.7) from Homo sapiens

26% id,
98% cov

H281DRAFT_02718: Glycine/D-amino acid oxidase (deaminating)
is similar to:
PaperBLAST

SOX_HUMAN / Q9P0Z9: Peroxisomal sarcosine oxidase; PSO; L-pipecolate oxidase; L-pipecolic acid oxidase; EC 1.5.3.1; EC 1.5.3.7 from Homo sapiens
Q9P0Z9: L-pipecolate oxidase (EC 1.5.3.7) from Homo sapiens

25% id,
97% cov

PIPOX / Q8N6Z6: L-pipecolate oxidase (EC 1.5.3.7) from Homo sapiens

25% id,
97% cov

H281DRAFT_01544: Glycine/D-amino acid oxidase (deaminating)
is similar to:
PaperBLAST

amaA / Q88CC4: pipecolate oxidase (EC 1.5.3.7) from Pseudomonas putida

25% id,
96% cov

H281DRAFT_01266: sarcosine oxidase subunit beta
is similar to:
PaperBLAST

amaA / Q88CC4: pipecolate oxidase (EC 1.5.3.7) from Pseudomonas putida

28% id,
83% cov

H281DRAFT_06330: sarcosine oxidase subunit beta
is similar to:
PaperBLAST

amaA / Q88CC4: pipecolate oxidase (EC 1.5.3.7) from Pseudomonas putida

24% id,
88% cov

H281DRAFT_00992: Glycine/D-amino acid oxidase (deaminating)
is similar to:
PaperBLAST

amaA / Q88CC4: pipecolate oxidase (EC 1.5.3.7) from Pseudomonas putida

30% id,
53% cov

H281DRAFT_06542: 4-methylaminobutanoate oxidase (formaldehyde-forming)
is similar to:
PaperBLAST

SOX_HUMAN / Q9P0Z9: Peroxisomal sarcosine oxidase; PSO; L-pipecolate oxidase; L-pipecolic acid oxidase; EC 1.5.3.1; EC 1.5.3.7 from Homo sapiens
Q9P0Z9: L-pipecolate oxidase (EC 1.5.3.7) from Homo sapiens

25% id,
48% cov

PIPOX / Q8N6Z6: L-pipecolate oxidase (EC 1.5.3.7) from Homo sapiens

25% id,
48% cov

H281DRAFT_02562: Glycine/D-amino acid oxidase (deaminating)
is similar to:
PaperBLAST

SOX_HUMAN / Q9P0Z9: Peroxisomal sarcosine oxidase; PSO; L-pipecolate oxidase; L-pipecolic acid oxidase; EC 1.5.3.1; EC 1.5.3.7 from Homo sapiens
Q9P0Z9: L-pipecolate oxidase (EC 1.5.3.7) from Homo sapiens

34% id,
16% cov

PIPOX / Q8N6Z6: L-pipecolate oxidase (EC 1.5.3.7) from Homo sapiens

36% id,
15% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 10 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory