Curated BLAST for Genomes

 

Curated BLAST

Searching in Paraburkholderia bryophila 376MFSha3.1 (Burk376)

Found 71 curated entries in PaperBLAST's database that match '2.1.2.1' as complete word(s).

These curated entries have 51 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Paraburkholderia bryophila 376MFSha3.1, or try another query

H281DRAFT_04726: serine hydroxymethyltransferase
is similar to:
PaperBLAST

B4ECY9: glycine hydroxymethyltransferase (EC 2.1.2.1) from Burkholderia cenocepacia

94% id,
100% cov

A0A069BAT4: glycine hydroxymethyltransferase (EC 2.1.2.1) from Burkholderia pseudomallei

92% id,
100% cov

R9YJZ9: glycine hydroxymethyltransferase (EC 2.1.2.1) from Shewanella algae

67% id,
100% cov

More...

H281DRAFT_02468: serine hydroxymethyltransferase
is similar to:
PaperBLAST

GLYA2_BURP1 / Q3JGP5: Serine hydroxymethyltransferase 2; SHMT 2; Serine methylase 2; EC 2.1.2.1 from Burkholderia pseudomallei

89% id,
100% cov

glyA / P34895: serine hydroxymethyltransferase subunit (EC 2.1.2.1) from Hyphomicrobium methylovorum

66% id,
98% cov

A8GTI9: glycine hydroxymethyltransferase (EC 2.1.2.1) from Rickettsia rickettsii

63% id,
99% cov

More...

H281DRAFT_00990: serine hydroxymethyltransferase (EC 2.1.2.1)
is similar to:
PaperBLAST

GLYA2_BURP1 / Q3JGP5: Serine hydroxymethyltransferase 2; SHMT 2; Serine methylase 2; EC 2.1.2.1 from Burkholderia pseudomallei

74% id,
100% cov

glyA / P34895: serine hydroxymethyltransferase subunit (EC 2.1.2.1) from Hyphomicrobium methylovorum

66% id,
98% cov

A8GTI9: glycine hydroxymethyltransferase (EC 2.1.2.1) from Rickettsia rickettsii

60% id,
100% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory