Curated BLAST for Genomes

 

Curated BLAST

Searching in Paraburkholderia bryophila 376MFSha3.1 (Burk376)

Found 34 curated entries in PaperBLAST's database that match '2.3.3.5' as complete word(s).

These curated entries have 19 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Paraburkholderia bryophila 376MFSha3.1, or try another query

H281DRAFT_06634: 2-methylcitrate synthase (EC 2.3.3.5)
is similar to:
PaperBLAST

PRPC_CUPNE / Q937N9: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Cupriavidus necator
Q937N9: 2-methylcitrate synthase (EC 2.3.3.5) from Cupriavidus metallidurans

86% id,
71% cov

Q2Z1A8: 2-methylcitrate synthase (EC 2.3.3.5) from Cupriavidus necator

86% id,
69% cov

PRPC_ECOLI / P31660: 2-methylcitrate synthase; 2-MCS; MCS; (2S,3S)-2-methylcitrate synthase; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Escherichia coli
YahS / b0333: 2-methylcitrate synthase (EC 2.3.3.5) from Escherichia coli
prpC / GB|AP_000985.1: 2-methylcitrate synthase; EC 2.3.3.5 from Escherichia coli
prpC / P31660: 2-methylcitrate synthase (EC 2.3.3.5) from Escherichia coli
P31660: 2-methylcitrate synthase (EC 2.3.3.5) from Escherichia coli

79% id,
74% cov

More...

H281DRAFT_06327: 2-methylcitrate synthase
is similar to:
PaperBLAST

PRPC_CUPNE / Q937N9: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Cupriavidus necator
Q937N9: 2-methylcitrate synthase (EC 2.3.3.5) from Cupriavidus metallidurans

84% id,
70% cov

Q2Z1A8: 2-methylcitrate synthase (EC 2.3.3.5) from Cupriavidus necator

83% id,
69% cov

PRPC_ECOLI / P31660: 2-methylcitrate synthase; 2-MCS; MCS; (2S,3S)-2-methylcitrate synthase; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Escherichia coli
YahS / b0333: 2-methylcitrate synthase (EC 2.3.3.5) from Escherichia coli
prpC / GB|AP_000985.1: 2-methylcitrate synthase; EC 2.3.3.5 from Escherichia coli
prpC / P31660: 2-methylcitrate synthase (EC 2.3.3.5) from Escherichia coli
P31660: 2-methylcitrate synthase (EC 2.3.3.5) from Escherichia coli

78% id,
70% cov

More...

H281DRAFT_06609: Citrate synthase
is similar to:
PaperBLAST

PRPC_CUPNE / Q937N9: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Cupriavidus necator
Q937N9: 2-methylcitrate synthase (EC 2.3.3.5) from Cupriavidus metallidurans

85% id,
51% cov

Q2Z1A8: 2-methylcitrate synthase (EC 2.3.3.5) from Cupriavidus necator

85% id,
50% cov

PRPC_ECOLI / P31660: 2-methylcitrate synthase; 2-MCS; MCS; (2S,3S)-2-methylcitrate synthase; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Escherichia coli
YahS / b0333: 2-methylcitrate synthase (EC 2.3.3.5) from Escherichia coli
prpC / GB|AP_000985.1: 2-methylcitrate synthase; EC 2.3.3.5 from Escherichia coli
prpC / P31660: 2-methylcitrate synthase (EC 2.3.3.5) from Escherichia coli
P31660: 2-methylcitrate synthase (EC 2.3.3.5) from Escherichia coli

79% id,
51% cov

More...

H281DRAFT_02980: Citrate synthase
is similar to:
PaperBLAST

PRPC_CUPNE / Q937N9: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Cupriavidus necator
Q937N9: 2-methylcitrate synthase (EC 2.3.3.5) from Cupriavidus metallidurans

84% id,
51% cov

Q2Z1A8: 2-methylcitrate synthase (EC 2.3.3.5) from Cupriavidus necator

85% id,
49% cov

PRPC_ECOLI / P31660: 2-methylcitrate synthase; 2-MCS; MCS; (2S,3S)-2-methylcitrate synthase; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Escherichia coli
YahS / b0333: 2-methylcitrate synthase (EC 2.3.3.5) from Escherichia coli
prpC / GB|AP_000985.1: 2-methylcitrate synthase; EC 2.3.3.5 from Escherichia coli
prpC / P31660: 2-methylcitrate synthase (EC 2.3.3.5) from Escherichia coli
P31660: 2-methylcitrate synthase (EC 2.3.3.5) from Escherichia coli

81% id,
51% cov

More...

H281DRAFT_06117: citrate synthase
is similar to:
PaperBLAST

PRPC_ABDS2 / O34002: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Antarctic bacterium

33% id,
99% cov

Pf6N2E2_6062: 2-methylcitrate synthase (EC 2.3.3.5) from Pseudomonas fluorescens

33% id,
97% cov

Q9I5E3: 2-methylcitrate synthase (EC 2.3.3.5) from Pseudomonas aeruginosa

32% id,
97% cov

More...

H281DRAFT_05547: citrate synthase
is similar to:
PaperBLAST

PRPC_ABDS2 / O34002: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Antarctic bacterium

33% id,
98% cov

P45858: citrate synthase (unknown stereospecificity) (EC 2.3.3.16); 2-methylcitrate synthase (EC 2.3.3.5) from Bacillus subtilis

31% id,
97% cov

PRPC2_CORGL / Q8NSL1: 2-methylcitrate synthase 2; 2-MCS; MCS; Citrate synthase 2; CS; EC 2.3.3.5; EC 2.3.3.16 from Corynebacterium glutamicum
Q8NSL1: 2-methylcitrate synthase (EC 2.3.3.5) from Corynebacterium glutamicum

31% id,
93% cov

More...

H281DRAFT_04099: citrate synthase
is similar to:
PaperBLAST

PRPC_CUPNE / Q937N9: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Cupriavidus necator
Q937N9: 2-methylcitrate synthase (EC 2.3.3.5) from Cupriavidus metallidurans

34% id,
49% cov

PRPC_SHEON / Q8EJW2: 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Shewanella oneidensis
SO0344: 2-methylcitrate synthase (EC 2.3.3.5) from Shewanella oneidensis

32% id,
50% cov

Q2Z1A8: 2-methylcitrate synthase (EC 2.3.3.5) from Cupriavidus necator

34% id,
47% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory