Curated BLAST for Genomes

 

Curated BLAST

Searching in Paraburkholderia bryophila 376MFSha3.1 (Burk376)

Found 108 curated entries in PaperBLAST's database that match '2.4.2.2'.

These curated entries have 73 distinct sequences.

Running ublast with E ≤ 0.01

Found 9 relevant proteins in Paraburkholderia bryophila 376MFSha3.1, or try another query

H281DRAFT_04670: tRNA-guanine transglycosylase
is similar to:
PaperBLAST

TGT_ECOLI / P0A847: Queuine tRNA-ribosyltransferase; Guanine insertion enzyme; tRNA-guanine transglycosylase; EC 2.4.2.29 from Escherichia coli
Tgt: tRNA-guanine transglycosylase (EC 2.4.2.29) from Escherichia coli
tgt / P0A847: tRNA-guanine transglycosylase (EC 2.4.2.29) from Escherichia coli
P0A847: tRNA-guanosine34 transglycosylase (EC 2.4.2.29) from Escherichia coli

63% id,
98% cov

Q54177: tRNA-guanosine34 transglycosylase (EC 2.4.2.29) from Shigella flexneri

63% id,
98% cov

tgt / Q183P1: preQ1 tRNA-ribosyltransferase (EC 2.4.2.29) from Clostridioides difficile

54% id,
97% cov

More...

H281DRAFT_00849: conserved hypothetical protein
is similar to:
PaperBLAST

PURNU_ECOLI / P33644: Purine nucleoside phosphorylase YfiH; Adenosine deaminase YfiH; Polyphenol oxidase YfiH; S-methyl-5'-thioadenosine phosphorylase YfiH; EC 2.4.2.1; EC 3.5.4.4; EC 1.10.3.-; EC 2.4.2.28 from Escherichia coli

45% id,
100% cov

PURNU_GEOS3 / P84138: Purine nucleoside phosphorylase YlmD; Adenosine deaminase YlmD; S-methyl-5'-thioadenosine phosphorylase YlmD; EC 2.4.2.1; EC 3.5.4.4; EC 2.4.2.28 from Geobacillus stearothermophilus

33% id,
89% cov

PURNU_UNKP / Q1EIR0: Adenosine deaminase RL5; Laccase RL5; Multicopper oxidase RL5; Polyphenol oxidase; Purine nucleoside phosphorylase RL5; S-methyl-5'-thioadenosine phosphorylase RL5; EC 3.5.4.4; EC 1.10.3.-; EC 2.4.2.1; EC 2.4.2.28 from Unknown prokaryotic

29% id,
94% cov

More...

H281DRAFT_00139: nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase
is similar to:
PaperBLAST

cobT / A0A1D9FP51: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) from Clostridium formicaceticum

42% id,
97% cov

cobT / A0A0K1TPX5: nicotinate-nucleotide--5-methoxybenzimidazole phosphoribosyltransferase (EC 2.4.2.21) from Moorella thermoacetica

42% id,
95% cov

COBT_SALTY / Q05603: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; NN:DBI PRT; N(1)-alpha-phosphoribosyltransferase; EC 2.4.2.21 from Salmonella typhimurium
cobT / Q05603: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase subunit (EC 2.4.2.21) from Salmonella typhimurium
Q05603: nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) from Salmonella enterica

38% id,
95% cov

More...

H281DRAFT_06269: hypoxanthine phosphoribosyltransferase
is similar to:
PaperBLAST

HGXR_PLAFG / P20035: Hypoxanthine-guanine-xanthine phosphoribosyltransferase; HGPRT; HGXPRT; HGXPRTase; EC 2.4.2.22; EC 2.4.2.8 from Plasmodium falciparum

26% id,
63% cov

H281DRAFT_06531: cob(II)yrinic acid a,c-diamide reductase /5,6-dimethylbenzimidazole synthase
is similar to:
PaperBLAST

D7GJ95: 5,6-dimethylbenzimidazole synthase (EC 1.13.11.79); nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) from Propionibacterium freudenreichii

36% id,
37% cov

H281DRAFT_04470: adenosylhomocysteine nucleosidase
is similar to:
PaperBLAST

Q7XA67: S-methyl-5'-thioadenosine phosphorylase (EC 2.4.2.28); adenosylhomocysteine nucleosidase (EC 3.2.2.9) from Arabidopsis thaliana

29% id,
28% cov

H281DRAFT_01384: cellulose synthase (UDP-forming)
is similar to:
PaperBLAST

Q9SRW9: 1,4-beta-D-xylan synthase (EC 2.4.2.24) from Arabidopsis thaliana

31% id,
13% cov

H281DRAFT_05683: Nitroreductase
is similar to:
PaperBLAST

D7GJ95: 5,6-dimethylbenzimidazole synthase (EC 1.13.11.79); nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) from Propionibacterium freudenreichii

36% id,
10% cov

H281DRAFT_03852: Nitroreductase
is similar to:
PaperBLAST

D7GJ95: 5,6-dimethylbenzimidazole synthase (EC 1.13.11.79); nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) from Propionibacterium freudenreichii

37% id,
8% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory