Curated BLAST for Genomes

 

Curated BLAST

Searching in Paraburkholderia bryophila 376MFSha3.1 (Burk376)

Found 3 curated entries in PaperBLAST's database that match '2.6.1.82' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 11 relevant proteins in Paraburkholderia bryophila 376MFSha3.1, or try another query

H281DRAFT_06478: succinylornithine aminotransferase apoenzyme
is similar to:
PaperBLAST

PAT_ECOLI / P42588: Putrescine aminotransferase; PAT; PATase; Cadaverine transaminase; Diamine transaminase; Putrescine transaminase; Putrescine--2-oxoglutaric acid transaminase; Putrescine:2-OG aminotransferase; EC 2.6.1.82; EC 2.6.1.29 from Escherichia coli
patA / P42588: putrescine aminotransferase (EC 2.6.1.82; EC 2.6.1.29) from Escherichia coli
P42588: putrescine-2-oxoglutarate transaminase (EC 2.6.1.82) from Escherichia coli

34% id,
83% cov

H281DRAFT_03179: 4-aminobutyrate aminotransferase apoenzyme
is similar to:
PaperBLAST

PAT_ECOLI / P42588: Putrescine aminotransferase; PAT; PATase; Cadaverine transaminase; Diamine transaminase; Putrescine transaminase; Putrescine--2-oxoglutaric acid transaminase; Putrescine:2-OG aminotransferase; EC 2.6.1.82; EC 2.6.1.29 from Escherichia coli
patA / P42588: putrescine aminotransferase (EC 2.6.1.82; EC 2.6.1.29) from Escherichia coli
P42588: putrescine-2-oxoglutarate transaminase (EC 2.6.1.82) from Escherichia coli

36% id,
78% cov

H281DRAFT_04057: acetylornithine aminotransferase apoenzyme
is similar to:
PaperBLAST

PAT_ECOLI / P42588: Putrescine aminotransferase; PAT; PATase; Cadaverine transaminase; Diamine transaminase; Putrescine transaminase; Putrescine--2-oxoglutaric acid transaminase; Putrescine:2-OG aminotransferase; EC 2.6.1.82; EC 2.6.1.29 from Escherichia coli
patA / P42588: putrescine aminotransferase (EC 2.6.1.82; EC 2.6.1.29) from Escherichia coli
P42588: putrescine-2-oxoglutarate transaminase (EC 2.6.1.82) from Escherichia coli

32% id,
83% cov

H281DRAFT_01578: beta-alanine--pyruvate transaminase
is similar to:
PaperBLAST

PAT_ECOLI / P42588: Putrescine aminotransferase; PAT; PATase; Cadaverine transaminase; Diamine transaminase; Putrescine transaminase; Putrescine--2-oxoglutaric acid transaminase; Putrescine:2-OG aminotransferase; EC 2.6.1.82; EC 2.6.1.29 from Escherichia coli
patA / P42588: putrescine aminotransferase (EC 2.6.1.82; EC 2.6.1.29) from Escherichia coli
P42588: putrescine-2-oxoglutarate transaminase (EC 2.6.1.82) from Escherichia coli

32% id,
82% cov

H281DRAFT_06342: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase
is similar to:
PaperBLAST

PAT_ECOLI / P42588: Putrescine aminotransferase; PAT; PATase; Cadaverine transaminase; Diamine transaminase; Putrescine transaminase; Putrescine--2-oxoglutaric acid transaminase; Putrescine:2-OG aminotransferase; EC 2.6.1.82; EC 2.6.1.29 from Escherichia coli
patA / P42588: putrescine aminotransferase (EC 2.6.1.82; EC 2.6.1.29) from Escherichia coli
P42588: putrescine-2-oxoglutarate transaminase (EC 2.6.1.82) from Escherichia coli

29% id,
90% cov

H281DRAFT_02621: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase
is similar to:
PaperBLAST

PAT_ECOLI / P42588: Putrescine aminotransferase; PAT; PATase; Cadaverine transaminase; Diamine transaminase; Putrescine transaminase; Putrescine--2-oxoglutaric acid transaminase; Putrescine:2-OG aminotransferase; EC 2.6.1.82; EC 2.6.1.29 from Escherichia coli
patA / P42588: putrescine aminotransferase (EC 2.6.1.82; EC 2.6.1.29) from Escherichia coli
P42588: putrescine-2-oxoglutarate transaminase (EC 2.6.1.82) from Escherichia coli

32% id,
81% cov

H281DRAFT_00095: beta-alanine--pyruvate transaminase
is similar to:
PaperBLAST

PAT_ECOLI / P42588: Putrescine aminotransferase; PAT; PATase; Cadaverine transaminase; Diamine transaminase; Putrescine transaminase; Putrescine--2-oxoglutaric acid transaminase; Putrescine:2-OG aminotransferase; EC 2.6.1.82; EC 2.6.1.29 from Escherichia coli
patA / P42588: putrescine aminotransferase (EC 2.6.1.82; EC 2.6.1.29) from Escherichia coli
P42588: putrescine-2-oxoglutarate transaminase (EC 2.6.1.82) from Escherichia coli

32% id,
81% cov

H281DRAFT_02094: adenosylmethionine-8-amino-7-oxononanoate aminotransferase
is similar to:
PaperBLAST

PAT_ECOLI / P42588: Putrescine aminotransferase; PAT; PATase; Cadaverine transaminase; Diamine transaminase; Putrescine transaminase; Putrescine--2-oxoglutaric acid transaminase; Putrescine:2-OG aminotransferase; EC 2.6.1.82; EC 2.6.1.29 from Escherichia coli
patA / P42588: putrescine aminotransferase (EC 2.6.1.82; EC 2.6.1.29) from Escherichia coli
P42588: putrescine-2-oxoglutarate transaminase (EC 2.6.1.82) from Escherichia coli

30% id,
83% cov

H281DRAFT_05493: 4-aminobutyrate---pyruvate transaminase
is similar to:
PaperBLAST

PAT_ECOLI / P42588: Putrescine aminotransferase; PAT; PATase; Cadaverine transaminase; Diamine transaminase; Putrescine transaminase; Putrescine--2-oxoglutaric acid transaminase; Putrescine:2-OG aminotransferase; EC 2.6.1.82; EC 2.6.1.29 from Escherichia coli
patA / P42588: putrescine aminotransferase (EC 2.6.1.82; EC 2.6.1.29) from Escherichia coli
P42588: putrescine-2-oxoglutarate transaminase (EC 2.6.1.82) from Escherichia coli

31% id,
81% cov

H281DRAFT_04018: glutamate-1-semialdehyde 2,1-aminomutase
is similar to:
PaperBLAST

PAT_ECOLI / P42588: Putrescine aminotransferase; PAT; PATase; Cadaverine transaminase; Diamine transaminase; Putrescine transaminase; Putrescine--2-oxoglutaric acid transaminase; Putrescine:2-OG aminotransferase; EC 2.6.1.82; EC 2.6.1.29 from Escherichia coli
patA / P42588: putrescine aminotransferase (EC 2.6.1.82; EC 2.6.1.29) from Escherichia coli
P42588: putrescine-2-oxoglutarate transaminase (EC 2.6.1.82) from Escherichia coli

29% id,
73% cov

H281DRAFT_01082: putrescine aminotransferase
is similar to:
PaperBLAST

PAT_ECOLI / P42588: Putrescine aminotransferase; PAT; PATase; Cadaverine transaminase; Diamine transaminase; Putrescine transaminase; Putrescine--2-oxoglutaric acid transaminase; Putrescine:2-OG aminotransferase; EC 2.6.1.82; EC 2.6.1.29 from Escherichia coli
patA / P42588: putrescine aminotransferase (EC 2.6.1.82; EC 2.6.1.29) from Escherichia coli
P42588: putrescine-2-oxoglutarate transaminase (EC 2.6.1.82) from Escherichia coli

24% id,
82% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 11 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory