Curated BLAST for Genomes

 

Curated BLAST

Searching in Paraburkholderia bryophila 376MFSha3.1 (Burk376)

Found 1 curated entries in PaperBLAST's database that match '2.7.1.13' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Paraburkholderia bryophila 376MFSha3.1, or try another query

H281DRAFT_05211: 2-dehydro-3-deoxygluconokinase
is similar to:
PaperBLAST

Q4KD57: 2-ketogluconokinase (EC 2.7.1.13) from Pseudomonas fluorescens

65% id,
95% cov

H281DRAFT_04459: 5-dehydro-2-deoxygluconokinase
is similar to:
PaperBLAST

Q4KD57: 2-ketogluconokinase (EC 2.7.1.13) from Pseudomonas fluorescens

29% id,
95% cov

H281DRAFT_05229: ribokinase
is similar to:
PaperBLAST

Q4KD57: 2-ketogluconokinase (EC 2.7.1.13) from Pseudomonas fluorescens

26% id,
90% cov

H281DRAFT_01116: ribokinase
is similar to:
PaperBLAST

Q4KD57: 2-ketogluconokinase (EC 2.7.1.13) from Pseudomonas fluorescens

25% id,
85% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory