Curated BLAST for Genomes

 

Curated BLAST

Searching in Paraburkholderia bryophila 376MFSha3.1 (Burk376)

Found 19 curated entries in PaperBLAST's database that match '2.7.1.39' as complete word(s).

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Paraburkholderia bryophila 376MFSha3.1, or try another query

H281DRAFT_06029: homoserine kinase
is similar to:
PaperBLAST

KHSE_PSEAE / P29364: Homoserine kinase; HK; HSK; EC 2.7.1.39 from Pseudomonas aeruginosa

41% id,
97% cov

Ga0059261_3253: homoserine kinase (EC 2.7.1.39) from Sphingomonas koreensis

31% id,
97% cov

H281DRAFT_05614: shikimate kinase
is similar to:
PaperBLAST

thrB / B8DPL9: homoserine kinase (EC 2.7.1.39) from Desulfovibrio vulgaris
DvMF_0971: Homoserine kinase (EC:2.7.1.39) from Desulfovibrio vulgaris

33% id,
86% cov

H281DRAFT_01937: 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
is similar to:
PaperBLAST

thrB / Q58504: homoserine kinase monomer (EC 2.7.1.39) from Methanocaldococcus jannaschii

26% id,
64% cov

CA265_RS23470: homoserine kinase (EC 2.7.1.39) from Pedobacter sp.

26% id,
64% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory