Curated BLAST for Genomes

 

Curated BLAST

Searching in Paraburkholderia bryophila 376MFSha3.1 (Burk376)

Found 32 curated entries in PaperBLAST's database that match '2.7.1.71' as complete word(s).

These curated entries have 17 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Paraburkholderia bryophila 376MFSha3.1, or try another query

H281DRAFT_05614: shikimate kinase
is similar to:
PaperBLAST

A0A0M3KL09: shikimate kinase (EC 2.7.1.71) from Acinetobacter baumannii

54% id,
99% cov

AROK_ECOLI / P0A6D7: Shikimate kinase 1; SK 1; Shikimate kinase I; SKI; EC 2.7.1.71 from Escherichia coli
AroK / b3390: shikimate kinase 1 (EC 2.7.1.71) from Escherichia coli
aroK / P0A6D7: shikimate kinase 1 (EC 2.7.1.71) from Escherichia coli
P0A6D7: shikimate kinase (EC 2.7.1.71) from Escherichia coli

51% id,
96% cov

AROK_MYCTU / P9WPY3: Shikimate kinase; SK; EC 2.7.1.71 from Mycobacterium tuberculosis
P9WPY3: shikimate kinase (EC 2.7.1.71) from Mycobacterium tuberculosis

37% id,
92% cov

More...

H281DRAFT_00372: transcriptional regulator, XRE family with shikimate kinase activity
is similar to:
PaperBLAST

AROK_MYCTU / P9WPY3: Shikimate kinase; SK; EC 2.7.1.71 from Mycobacterium tuberculosis
P9WPY3: shikimate kinase (EC 2.7.1.71) from Mycobacterium tuberculosis

32% id,
97% cov

AROK_ECOLI / P0A6D7: Shikimate kinase 1; SK 1; Shikimate kinase I; SKI; EC 2.7.1.71 from Escherichia coli
AroK / b3390: shikimate kinase 1 (EC 2.7.1.71) from Escherichia coli
aroK / P0A6D7: shikimate kinase 1 (EC 2.7.1.71) from Escherichia coli
P0A6D7: shikimate kinase (EC 2.7.1.71) from Escherichia coli

29% id,
98% cov

AROL_ECOLI / P0A6E1: Shikimate kinase 2; SK 2; Shikimate kinase II; SKII; EC 2.7.1.71 from Escherichia coli
AroL / b0388: shikimate kinase 2 (EC 2.7.1.71) from Escherichia coli
aroL / P0A6E1: shikimate kinase 2 (EC 2.7.1.71) from Escherichia coli

28% id,
97% cov

More...

H281DRAFT_03922: 3-phosphoshikimate 1-carboxyvinyltransferase
is similar to:
PaperBLAST

ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae
ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae

41% id,
28% cov

ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans
aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans

41% id,
27% cov

H281DRAFT_05615: 3-dehydroquinate synthase
is similar to:
PaperBLAST

ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans
aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans

38% id,
23% cov

ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae
ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae

39% id,
23% cov

H281DRAFT_03216: shikimate dehydrogenase (EC 1.1.1.25)
is similar to:
PaperBLAST

ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae
ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae

24% id,
17% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

35827-37053 (frame +1) on H281DRAFT_scaffold00014.14
is similar to:
PaperBLAST

ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans
aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans
Also see hits to annotated proteins above

37% id,
25% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory