Curated BLAST for Genomes

 

Curated BLAST

Searching in Paraburkholderia bryophila 376MFSha3.1 (Burk376)

Found 13 curated entries in PaperBLAST's database that match '2.7.1.92' as complete word(s).

These curated entries have 11 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Paraburkholderia bryophila 376MFSha3.1, or try another query

H281DRAFT_04459: 5-dehydro-2-deoxygluconokinase
is similar to:
PaperBLAST

BPHYT_RS13910: 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) from Burkholderia phytofirmans

92% id,
100% cov

HSERO_RS12125: 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) from Herbaspirillum seropedicae

71% id,
99% cov

PS417_11850: 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) from Pseudomonas simiae

66% id,
100% cov

More...

H281DRAFT_05229: ribokinase
is similar to:
PaperBLAST

PGA1_c07240: 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92) from Phaeobacter inhibens

27% id,
92% cov

SMc01165: 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) from Sinorhizobium meliloti

23% id,
49% cov

H281DRAFT_05211: 2-dehydro-3-deoxygluconokinase
is similar to:
PaperBLAST

IOLC_BACSU / P42414: 5-dehydro-2-deoxygluconokinase; 2-deoxy-5-keto-D-gluconate kinase; DKG kinase; EC 2.7.1.92 from Bacillus subtilis
iolC / P42414: 5-dehydro-2-deoxy-D-gluconate kinase (EC 2.7.1.92) from Bacillus subtilis

25% id,
98% cov

BWI76_RS03085: 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) from Klebsiella michiganensis

28% id,
53% cov

BPHYT_RS13910: 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) from Burkholderia phytofirmans

30% id,
48% cov

H281DRAFT_00797: D-alpha,beta-D-heptose 7-phosphate 1-kinase (EC 2.7.1.167)
is similar to:
PaperBLAST

PGA1_c07240: 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92) from Phaeobacter inhibens

24% id,
80% cov

Pf6N2E2_512: 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) from Pseudomonas fluorescens

35% id,
11% cov

AO353_21335: 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) from Pseudomonas fluorescens

35% id,
9% cov

More...

H281DRAFT_00856: 2-keto-3-deoxygluconate kinase
is similar to:
PaperBLAST

BWI76_RS03085: 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) from Klebsiella michiganensis

23% id,
52% cov

iolC-DUF2090 / A0A0H3C6B4: bifunctional 5-dehydro-2-deoxygluconokinase/5-dehydro-2-deoxyphosphogluconate aldolase (EC 2.7.1.92; EC 4.1.2.29) from Caulobacter vibrioides
CCNA_01356: 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) from Caulobacter crescentus

24% id,
51% cov

Pf6N2E2_512: 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) from Pseudomonas fluorescens

23% id,
50% cov

More...

H281DRAFT_06279: adenosine kinase
is similar to:
PaperBLAST

BWI76_RS03085: 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) from Klebsiella michiganensis

21% id,
49% cov

H281DRAFT_01116: ribokinase
is similar to:
PaperBLAST

BPHYT_RS13910: 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) from Burkholderia phytofirmans

30% id,
20% cov

BWI76_RS03085: 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) from Klebsiella michiganensis

29% id,
21% cov

AO356_23160: 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) from Pseudomonas fluorescens

29% id,
21% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory