Curated BLAST for Genomes

 

Curated BLAST

Searching in Paraburkholderia bryophila 376MFSha3.1 (Burk376)

Found 7 curated entries in PaperBLAST's database that match '3.1.1.57' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Paraburkholderia bryophila 376MFSha3.1, or try another query

H281DRAFT_01364: Predicted metal-dependent hydrolase, TIM-barrel fold
is similar to:
PaperBLAST

LIGI_SPHSK / O87170: 2-pyrone-4,6-dicarboxylate hydrolase; PDC hydrolase; 2-pyrone-4,6-dicarboxylate lactonase; EC 3.1.1.57 from Sphingobium sp.
ligI / O87170: 2-pyrone-4,6-dicarboxylate hydrolase (EC 3.1.1.57) from Sphingobium sp.
O87170: 2-pyrone-4,6-dicarboxylate lactonase (EC 3.1.1.57) from Sphingomonas paucimobilis

47% id,
94% cov

LIGI_COMTE / Q93PS7: 2-pyrone-4,6-dicarbaxylate hydrolase; PDC hydrolase; 2-pyrone-4,6-dicarboxylate lactonase; EC 3.1.1.57 from Comamonas testosteroni
pmdD / Q93PS7: 2-pyrone-4,6-dicarboxylate hydrolase (EC 3.1.1.57) from Comamonas testosteroni

47% id,
93% cov

proL / Q75T30: 2-pyrone-4,6-dicarboxylate hydrolase (EC 3.1.1.57) from Pseudomonas straminea

47% id,
93% cov

More...

H281DRAFT_05953: Predicted metal-dependent hydrolase, TIM-barrel fold
is similar to:
PaperBLAST

D1MW98: 2-pyrone-4,6-dicarboxylate lactonase (EC 3.1.1.57) from Comamonas sp.

39% id,
94% cov

LIGI_COMTE / Q93PS7: 2-pyrone-4,6-dicarbaxylate hydrolase; PDC hydrolase; 2-pyrone-4,6-dicarboxylate lactonase; EC 3.1.1.57 from Comamonas testosteroni
pmdD / Q93PS7: 2-pyrone-4,6-dicarboxylate hydrolase (EC 3.1.1.57) from Comamonas testosteroni

39% id,
94% cov

proL / Q75T30: 2-pyrone-4,6-dicarboxylate hydrolase (EC 3.1.1.57) from Pseudomonas straminea

39% id,
94% cov

More...

H281DRAFT_06139: Predicted metal-dependent hydrolase, TIM-barrel fold
is similar to:
PaperBLAST

LIGI_SPHSK / O87170: 2-pyrone-4,6-dicarboxylate hydrolase; PDC hydrolase; 2-pyrone-4,6-dicarboxylate lactonase; EC 3.1.1.57 from Sphingobium sp.
ligI / O87170: 2-pyrone-4,6-dicarboxylate hydrolase (EC 3.1.1.57) from Sphingobium sp.
O87170: 2-pyrone-4,6-dicarboxylate lactonase (EC 3.1.1.57) from Sphingomonas paucimobilis

36% id,
96% cov

D1MW98: 2-pyrone-4,6-dicarboxylate lactonase (EC 3.1.1.57) from Comamonas sp.

34% id,
94% cov

LIGI_COMTE / Q93PS7: 2-pyrone-4,6-dicarbaxylate hydrolase; PDC hydrolase; 2-pyrone-4,6-dicarboxylate lactonase; EC 3.1.1.57 from Comamonas testosteroni
pmdD / Q93PS7: 2-pyrone-4,6-dicarboxylate hydrolase (EC 3.1.1.57) from Comamonas testosteroni

33% id,
94% cov

More...

H281DRAFT_05538: D-galactarolactone isomerase
is similar to:
PaperBLAST

D1MW98: 2-pyrone-4,6-dicarboxylate lactonase (EC 3.1.1.57) from Comamonas sp.

35% id,
95% cov

LIGI_COMTE / Q93PS7: 2-pyrone-4,6-dicarbaxylate hydrolase; PDC hydrolase; 2-pyrone-4,6-dicarboxylate lactonase; EC 3.1.1.57 from Comamonas testosteroni
pmdD / Q93PS7: 2-pyrone-4,6-dicarboxylate hydrolase (EC 3.1.1.57) from Comamonas testosteroni

35% id,
95% cov

proL / Q75T30: 2-pyrone-4,6-dicarboxylate hydrolase (EC 3.1.1.57) from Pseudomonas straminea

35% id,
95% cov

More...

H281DRAFT_01747: D-galactarolactone isomerase
is similar to:
PaperBLAST

LIGI_COMTE / Q93PS7: 2-pyrone-4,6-dicarbaxylate hydrolase; PDC hydrolase; 2-pyrone-4,6-dicarboxylate lactonase; EC 3.1.1.57 from Comamonas testosteroni
pmdD / Q93PS7: 2-pyrone-4,6-dicarboxylate hydrolase (EC 3.1.1.57) from Comamonas testosteroni

35% id,
90% cov

D1MW98: 2-pyrone-4,6-dicarboxylate lactonase (EC 3.1.1.57) from Comamonas sp.

34% id,
90% cov

proL / Q75T30: 2-pyrone-4,6-dicarboxylate hydrolase (EC 3.1.1.57) from Pseudomonas straminea

34% id,
90% cov

More...

H281DRAFT_06389: Predicted metal-dependent hydrolase, TIM-barrel fold
is similar to:
PaperBLAST

LIGI_COMTE / Q93PS7: 2-pyrone-4,6-dicarbaxylate hydrolase; PDC hydrolase; 2-pyrone-4,6-dicarboxylate lactonase; EC 3.1.1.57 from Comamonas testosteroni
pmdD / Q93PS7: 2-pyrone-4,6-dicarboxylate hydrolase (EC 3.1.1.57) from Comamonas testosteroni

35% id,
81% cov

proL / Q75T30: 2-pyrone-4,6-dicarboxylate hydrolase (EC 3.1.1.57) from Pseudomonas straminea

35% id,
81% cov

D1MW98: 2-pyrone-4,6-dicarboxylate lactonase (EC 3.1.1.57) from Comamonas sp.

35% id,
81% cov

H281DRAFT_03854: Predicted metal-dependent hydrolase, TIM-barrel fold
is similar to:
PaperBLAST

LIGI_SPHSK / O87170: 2-pyrone-4,6-dicarboxylate hydrolase; PDC hydrolase; 2-pyrone-4,6-dicarboxylate lactonase; EC 3.1.1.57 from Sphingobium sp.
ligI / O87170: 2-pyrone-4,6-dicarboxylate hydrolase (EC 3.1.1.57) from Sphingobium sp.
O87170: 2-pyrone-4,6-dicarboxylate lactonase (EC 3.1.1.57) from Sphingomonas paucimobilis

29% id,
91% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory