Curated BLAST for Genomes

 

Curated BLAST

Searching in Paraburkholderia bryophila 376MFSha3.1 (Burk376)

Found 31 curated entries in PaperBLAST's database that match '3.5.1.9' as complete word(s).

These curated entries have 22 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Paraburkholderia bryophila 376MFSha3.1, or try another query

H281DRAFT_04142: Kynurenine formamidase
is similar to:
PaperBLAST

BPHYT_RS16025: Kynurenine formamidase, bacterial (EC 3.5.1.9) from Burkholderia phytofirmans

91% id,
100% cov

Q63WP3: arylformamidase (EC 3.5.1.9) from Burkholderia pseudomallei

80% id,
99% cov

KYNB_BURCJ / B4E9I9: Kynurenine formamidase; KFA; KFase; Arylformamidase; N-formylkynurenine formamidase; FKF; EC 3.5.1.9 from Burkholderia cenocepacia
B4E9I9: arylformamidase (EC 3.5.1.9) from Burkholderia cenocepacia

80% id,
98% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

233368-234246 (frame +1) on H281DRAFT_scaffold00005.5
is similar to:
PaperBLAST

sibK / C0LTM5: aryl formamidase (EC 3.5.1.9) from Streptosporangium sibiricum

25% id,
66% cov

43456-44424 (frame -3) on H281DRAFT_scaffold00013.13
is similar to:
PaperBLAST

sibK / C0LTM5: aryl formamidase (EC 3.5.1.9) from Streptosporangium sibiricum

36% id,
45% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory