Curated BLAST for Genomes


Curated BLAST

Searching in Paraburkholderia bryophila 376MFSha3.1 (Burk376)

Found 11 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Paraburkholderia bryophila 376MFSha3.1, or try another query

H281DRAFT_05660: phosphoribosyl-AMP cyclohydrolase
is similar to:

HSERO_RS20310: phosphoribosyl-AMP cyclohydrolase (EC from Herbaspirillum seropedicae

78% id,
75% cov

HIS3_METTH / O26347: Phosphoribosyl-AMP cyclohydrolase; PRA-CH; EC from Methanothermobacter thermautotrophicus

52% id,
93% cov

HIS3_METVA / Q50837: Phosphoribosyl-AMP cyclohydrolase; PRA-CH; EC from Methanococcus vannielii
Q50837: phosphoribosyl-AMP cyclohydrolase (EC from Methanococcus vannielii

48% id,
72% cov


H281DRAFT_05652: histidinol dehydrogenase
is similar to:

HIS2_YEAST / P00815: Histidine biosynthesis trifunctional protein; EC; EC; EC from Saccharomyces cerevisiae

34% id,
54% cov

H281DRAFT_05661: phosphoribosyl-ATP pyrophosphatase
is similar to:

HIS2_ARATH / O82768: Histidine biosynthesis bifunctional protein hisIE, chloroplastic; Protein HISTIDINE BIOSYNTHESIS 2; EC; EC from Arabidopsis thaliana
At-IE / O82768: phosphoribosyl-AMP cyclohydrolase (EC; EC from Arabidopsis thaliana

38% id,
37% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory