Curated BLAST for Genomes

 

Curated BLAST

Searching in Paraburkholderia bryophila 376MFSha3.1 (Burk376)

Found 56 curated entries in PaperBLAST's database that match '4.1.1.19' as complete word(s).

These curated entries have 40 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Paraburkholderia bryophila 376MFSha3.1, or try another query

H281DRAFT_00160: ornithine decarboxylase
is similar to:
PaperBLAST

E8X9U7: arginine decarboxylase (EC 4.1.1.19) from Salmonella enterica

37% id,
100% cov

ADIA_ECOLI / P28629: Biodegradative arginine decarboxylase; ADC; EC 4.1.1.19 from Escherichia coli
AdiA / b4117: arginine decarboxylase, degradative (EC 4.1.1.19) from Escherichia coli
adiA / GI|145339: biodegradative arginine decarboxylase; EC 4.1.1.19 from Escherichia coli
adiA / P28629: arginine decarboxylase, degradative (EC 4.1.1.19) from Escherichia coli
P28629: arginine decarboxylase (EC 4.1.1.19) from Escherichia coli

37% id,
100% cov

Q5NT93: arginine decarboxylase (EC 4.1.1.19) from Selenomonas ruminantium

24% id,
59% cov

More...

H281DRAFT_05606: diaminopimelate decarboxylase
is similar to:
PaperBLAST

MADC2 / Q9M618: arginine decarboxylase (EC 4.1.1.19) from Brassica juncea

28% id,
51% cov

Psest_3366: Biosynthetic arginine decarboxylase (EC 4.1.1.19) from Pseudomonas stutzeri

28% id,
48% cov

SPE2_ARATH / O23141: Arginine decarboxylase 2; ADC 2; ARGDC 2; AtADC2; ADC-N; EC 4.1.1.19 from Arabidopsis thaliana
O23141: arginine decarboxylase (EC 4.1.1.19) from Arabidopsis thaliana

26% id,
50% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory