Curated BLAST for Genomes

 

Curated BLAST

Searching in Paraburkholderia bryophila 376MFSha3.1 (Burk376)

Found 89 curated entries in PaperBLAST's database that match '4.1.2.4'.

These curated entries have 58 distinct sequences.

Running ublast with E ≤ 0.01

Found 26 relevant proteins in Paraburkholderia bryophila 376MFSha3.1, or try another query

H281DRAFT_00373: 2,3-dihydro-2,3-dihydroxybenzoyl-CoA ring cleavage enzyme
is similar to:
PaperBLAST

BOXC_AROEV / Q84HH6: Benzoyl-CoA-dihydrodiol lyase; EC 4.1.2.44 from Aromatoleum evansii
boxC / Q84HH6: benzoyl-CoA-dihydrodiol lyase monomer (EC 4.1.2.44) from Azoarcus evansii
Q84HH6: 2,3-epoxybenzoyl-CoA dihydrolase (EC 4.1.2.44) from Azoarcus evansii

69% id,
98% cov

H281DRAFT_04726: serine hydroxymethyltransferase
is similar to:
PaperBLAST

P0A825: glycine hydroxymethyltransferase (EC 2.1.2.1); low-specificity L-threonine aldolase (EC 4.1.2.48) from Escherichia coli

64% id,
100% cov

GLYA_HYDTT / D3DKC4: Serine hydroxymethyltransferase; SHMT; Serine methylase; L-threonine/L-allo-threonine aldolase; EC 2.1.2.1; EC 4.1.2.48 from Hydrogenobacter thermophilus

63% id,
95% cov

GLYA_METJA / Q58992: Serine hydroxymethyltransferase; SHMT; Serine methylase; L-allo-threonine aldolase; EC 2.1.2.-; EC 4.1.2.49 from Methanocaldococcus jannaschii

39% id,
92% cov

H281DRAFT_04448: L-threonine aldolase
is similar to:
PaperBLAST

O50584: low-specificity L-threonine aldolase (EC 4.1.2.48) from Pseudomonas sp.

64% id,
99% cov

A0T1V9: low-specificity L-threonine aldolase (EC 4.1.2.48) from Sinorhizobium arboris

41% id,
99% cov

LTAE_ECOLI / P75823: Low specificity L-threonine aldolase; Low specificity L-TA; EC 4.1.2.48 from Escherichia coli
LtaA / b0870: low-specificity L-threonine aldolase (EC 4.1.2.48; EC 4.1.2.5; EC 4.1.2.26; EC 4.1.2.49) from Escherichia coli
ltaE / P75823: low-specificity L-threonine aldolase (EC 4.1.2.48; EC 4.1.2.26) from Escherichia coli
P75823: low-specificity L-threonine aldolase (EC 4.1.2.48) from Escherichia coli

28% id,
95% cov

More...

H281DRAFT_01118: deoxyribose-phosphate aldolase
is similar to:
PaperBLAST

DEOC_HUMAN / Q9Y315: Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Homo sapiens
Q9Y315: deoxyribose-phosphate aldolase (EC 4.1.2.4) from Homo sapiens

59% id,
99% cov

Q7WT44: deoxyribose-phosphate aldolase (EC 4.1.2.4) from Klebsiella pneumoniae

38% id,
95% cov

DEOC_SALTY / Q8ZJV8: Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Salmonella typhimurium

39% id,
93% cov

More...

H281DRAFT_03052: L-threonine aldolase
is similar to:
PaperBLAST

LTAE_ECOLI / P75823: Low specificity L-threonine aldolase; Low specificity L-TA; EC 4.1.2.48 from Escherichia coli
LtaA / b0870: low-specificity L-threonine aldolase (EC 4.1.2.48; EC 4.1.2.5; EC 4.1.2.26; EC 4.1.2.49) from Escherichia coli
ltaE / P75823: low-specificity L-threonine aldolase (EC 4.1.2.48; EC 4.1.2.26) from Escherichia coli
P75823: low-specificity L-threonine aldolase (EC 4.1.2.48) from Escherichia coli

58% id,
100% cov

LTAA_AERJA / O07051: L-allo-threonine aldolase; L-allo-TA; L-allo-threonine acetaldehyde-lyase; EC 4.1.2.49 from Aeromonas jandaei
ltaA / O07051: L-allo-threonine aldolase subunit (EC 4.1.2.48) from Aeromonas jandaei
O07051: L-allo-threonine aldolase (EC 4.1.2.49) from Aeromonas jandaei

56% id,
99% cov

THA2_ARATH / Q9FPH3: Probable low-specificity L-threonine aldolase 2; Threonine aldolase 2; EC 4.1.2.48 from Arabidopsis thaliana

46% id,
97% cov

More...

H281DRAFT_02468: serine hydroxymethyltransferase
is similar to:
PaperBLAST

GLYA_HYDTT / D3DKC4: Serine hydroxymethyltransferase; SHMT; Serine methylase; L-threonine/L-allo-threonine aldolase; EC 2.1.2.1; EC 4.1.2.48 from Hydrogenobacter thermophilus

59% id,
95% cov

P0A825: glycine hydroxymethyltransferase (EC 2.1.2.1); low-specificity L-threonine aldolase (EC 4.1.2.48) from Escherichia coli

56% id,
99% cov

GLYA_METJA / Q58992: Serine hydroxymethyltransferase; SHMT; Serine methylase; L-allo-threonine aldolase; EC 2.1.2.-; EC 4.1.2.49 from Methanocaldococcus jannaschii

35% id,
93% cov

H281DRAFT_00990: serine hydroxymethyltransferase (EC 2.1.2.1)
is similar to:
PaperBLAST

GLYA_HYDTT / D3DKC4: Serine hydroxymethyltransferase; SHMT; Serine methylase; L-threonine/L-allo-threonine aldolase; EC 2.1.2.1; EC 4.1.2.48 from Hydrogenobacter thermophilus

58% id,
95% cov

P0A825: glycine hydroxymethyltransferase (EC 2.1.2.1); low-specificity L-threonine aldolase (EC 4.1.2.48) from Escherichia coli

58% id,
95% cov

GLYA_METJA / Q58992: Serine hydroxymethyltransferase; SHMT; Serine methylase; L-allo-threonine aldolase; EC 2.1.2.-; EC 4.1.2.49 from Methanocaldococcus jannaschii

36% id,
97% cov

H281DRAFT_01311: fructose-bisphosphate aldolase
is similar to:
PaperBLAST

KBAY_ECOLX / Q9KIP8: D-tagatose-1,6-bisphosphate aldolase subunit KbaY; TBPA; TagBP aldolase; D-tagatose-bisphosphate aldolase class II; Ketose 1,6-bisphosphate aldolase class II; Tagatose-bisphosphate aldolase; EC 4.1.2.40 from Escherichia coli

34% id,
99% cov

KBAY_ECOLI / P0AB74: D-tagatose-1,6-bisphosphate aldolase subunit KbaY; TBPA; TagBP aldolase; D-tagatose-bisphosphate aldolase class II; Ketose 1,6-bisphosphate aldolase class II; Tagatose-bisphosphate aldolase; EC 4.1.2.40 from Escherichia coli
Kba / b3137: tagatose-1,6-bisphosphate aldolase 1 (EC 4.1.2.40) from Escherichia coli
kbaY / RF|NP_417606: tagatose-bisphosphate aldolase; EC 4.1.2.40 from Escherichia coli
kbaY / P0AB76: D-tagatose-1,6-bisphosphate aldolase subunit KbaY (EC 4.1.2.40) from Escherichia coli
kbaY / P0AB74: tagatose-1,6-bisphosphate aldolase 1 subunit KbaY (EC 4.1.2.40) from Escherichia coli

34% id,
99% cov

GATY_ECOLI / P0C8J6: D-tagatose-1,6-bisphosphate aldolase subunit GatY; TBPA; TagBP aldolase; D-tagatose-bisphosphate aldolase class II; Tagatose-bisphosphate aldolase; EC 4.1.2.40 from Escherichia coli
YegF / b2096: tagatose-1,6-bisphosphate aldolase 2 (EC 4.1.2.40) from Escherichia coli
gatY / P0C8J6: tagatose-1,6-bisphosphate aldolase 2 subunit GatY (EC 4.1.2.40) from Escherichia coli

33% id,
100% cov

More...

H281DRAFT_04188: fructose-bisphosphate aldolase
is similar to:
PaperBLAST

GATY_ECOLI / P0C8J6: D-tagatose-1,6-bisphosphate aldolase subunit GatY; TBPA; TagBP aldolase; D-tagatose-bisphosphate aldolase class II; Tagatose-bisphosphate aldolase; EC 4.1.2.40 from Escherichia coli
YegF / b2096: tagatose-1,6-bisphosphate aldolase 2 (EC 4.1.2.40) from Escherichia coli
gatY / P0C8J6: tagatose-1,6-bisphosphate aldolase 2 subunit GatY (EC 4.1.2.40) from Escherichia coli

34% id,
100% cov

GATY_ECOLX / P0C8J7: D-tagatose-1,6-bisphosphate aldolase subunit GatY; TBPA; TagBP aldolase; D-tagatose-bisphosphate aldolase class II; Tagatose-bisphosphate aldolase; EC 4.1.2.40 from Escherichia coli

33% id,
100% cov

GATY_KLEOX / Q8VS16: D-tagatose-1,6-bisphosphate aldolase subunit GatY; TBPA; TagBP aldolase; D-tagatose-bisphosphate aldolase class II; Tagatose-bisphosphate aldolase; EC 4.1.2.40 from Klebsiella oxytoca
Q8VS16: tagatose-bisphosphate aldolase (EC 4.1.2.40) from Klebsiella oxytoca

33% id,
100% cov

More...

H281DRAFT_04166: S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase
is similar to:
PaperBLAST

AHNL_LINUS / P93243: Aliphatic (R)-hydroxynitrile lyase; LuHNL; EC 4.1.2.46 from Linum usitatissimum
HNL / P93243: aliphatic (R)-hydroxynitrile lyase monomer (EC 4.1.2.46) from Linum usitatissimum
P93243: aliphatic (R)-hydroxynitrile lyase (EC 4.1.2.46) from Linum usitatissimum

31% id,
89% cov

H281DRAFT_03260: D-serine deaminase, pyridoxal phosphate-dependent
is similar to:
PaperBLAST

DTA_ARTSP / O82872: D-threonine aldolase; EC 4.1.2.42 from Arthrobacter sp.
O82872: D-threonine aldolase (EC 4.1.2.42) from Arthrobacter sp.

30% id,
87% cov

H281DRAFT_03220: 4-hydroxy-tetrahydrodipicolinate synthase
is similar to:
PaperBLAST

NSAE_SPHXE / Q9X9Q6: Trans-O-hydroxybenzylidenepyruvate hydratase-aldolase; THBPA hydratase-aldolase; 2'-hydroxybenzalpyruvate aldolase; EC 4.1.2.45 from Sphingobium xenophagum
Q9X9Q6: trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (EC 4.1.2.45) from Sphingobium xenophagum

26% id,
89% cov

H281DRAFT_03275: Threonine dehydrogenase
is similar to:
PaperBLAST

AHNL_LINUS / P93243: Aliphatic (R)-hydroxynitrile lyase; LuHNL; EC 4.1.2.46 from Linum usitatissimum
HNL / P93243: aliphatic (R)-hydroxynitrile lyase monomer (EC 4.1.2.46) from Linum usitatissimum
P93243: aliphatic (R)-hydroxynitrile lyase (EC 4.1.2.46) from Linum usitatissimum

24% id,
91% cov

H281DRAFT_03278: Threonine dehydrogenase
is similar to:
PaperBLAST

AHNL_LINUS / P93243: Aliphatic (R)-hydroxynitrile lyase; LuHNL; EC 4.1.2.46 from Linum usitatissimum
HNL / P93243: aliphatic (R)-hydroxynitrile lyase monomer (EC 4.1.2.46) from Linum usitatissimum
P93243: aliphatic (R)-hydroxynitrile lyase (EC 4.1.2.46) from Linum usitatissimum

32% id,
65% cov

H281DRAFT_01480: 4-hydroxy-tetrahydrodipicolinate synthase
is similar to:
PaperBLAST

NSAE_SPHXE / Q9X9Q6: Trans-O-hydroxybenzylidenepyruvate hydratase-aldolase; THBPA hydratase-aldolase; 2'-hydroxybenzalpyruvate aldolase; EC 4.1.2.45 from Sphingobium xenophagum
Q9X9Q6: trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (EC 4.1.2.45) from Sphingobium xenophagum

26% id,
78% cov

H281DRAFT_03586: L-threonine 3-dehydrogenase
is similar to:
PaperBLAST

AHNL_LINUS / P93243: Aliphatic (R)-hydroxynitrile lyase; LuHNL; EC 4.1.2.46 from Linum usitatissimum
HNL / P93243: aliphatic (R)-hydroxynitrile lyase monomer (EC 4.1.2.46) from Linum usitatissimum
P93243: aliphatic (R)-hydroxynitrile lyase (EC 4.1.2.46) from Linum usitatissimum

25% id,
78% cov

H281DRAFT_01304: formaldehyde activating enzyme
is similar to:
PaperBLAST

FAEHP_METBF / Q46DY5: Bifunctional enzyme Fae/Hps; EC 4.2.1.147; EC 4.1.2.43 from Methanosarcina barkeri

47% id,
40% cov

H281DRAFT_00991: 4-hydroxy-tetrahydrodipicolinate synthase
is similar to:
PaperBLAST

NSAE_SPHXE / Q9X9Q6: Trans-O-hydroxybenzylidenepyruvate hydratase-aldolase; THBPA hydratase-aldolase; 2'-hydroxybenzalpyruvate aldolase; EC 4.1.2.45 from Sphingobium xenophagum
Q9X9Q6: trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (EC 4.1.2.45) from Sphingobium xenophagum

22% id,
82% cov

H281DRAFT_01693: Threonine dehydrogenase
is similar to:
PaperBLAST

AHNL_LINUS / P93243: Aliphatic (R)-hydroxynitrile lyase; LuHNL; EC 4.1.2.46 from Linum usitatissimum
HNL / P93243: aliphatic (R)-hydroxynitrile lyase monomer (EC 4.1.2.46) from Linum usitatissimum
P93243: aliphatic (R)-hydroxynitrile lyase (EC 4.1.2.46) from Linum usitatissimum

29% id,
62% cov

H281DRAFT_00509: dihydrodipicolinate synthase
is similar to:
PaperBLAST

nahE / P0A144: trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (EC 4.1.2.45) from Pseudomonas putida

28% id,
59% cov

NSAE_SPHXE / Q9X9Q6: Trans-O-hydroxybenzylidenepyruvate hydratase-aldolase; THBPA hydratase-aldolase; 2'-hydroxybenzalpyruvate aldolase; EC 4.1.2.45 from Sphingobium xenophagum
Q9X9Q6: trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (EC 4.1.2.45) from Sphingobium xenophagum

27% id,
61% cov

NAHE1_PSEPU / Q51947: Trans-O-hydroxybenzylidenepyruvate hydratase-aldolase; THBPA hydratase-aldolase; 2'-hydroxybenzalpyruvate aldolase; EC 4.1.2.45 from Pseudomonas putida
Q51947: trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (EC 4.1.2.45) from Pseudomonas putida

29% id,
51% cov

H281DRAFT_03542: 5,6,7,8-tetrahydromethanopterin hydro-lyase
is similar to:
PaperBLAST

FAEHP_METBF / Q46DY5: Bifunctional enzyme Fae/Hps; EC 4.2.1.147; EC 4.1.2.43 from Methanosarcina barkeri

36% id,
38% cov

H281DRAFT_05379: uncharacterized zinc-type alcohol dehydrogenase-like protein
is similar to:
PaperBLAST

AHNL_LINUS / P93243: Aliphatic (R)-hydroxynitrile lyase; LuHNL; EC 4.1.2.46 from Linum usitatissimum
HNL / P93243: aliphatic (R)-hydroxynitrile lyase monomer (EC 4.1.2.46) from Linum usitatissimum
P93243: aliphatic (R)-hydroxynitrile lyase (EC 4.1.2.46) from Linum usitatissimum

25% id,
53% cov

H281DRAFT_01310: ribulose-5-phosphate 3-epimerase (EC 5.1.3.1)
is similar to:
PaperBLAST

HPS_MYCGS / Q9LBW4: 3-hexulose-6-phosphate synthase; HPS; D-arabino-3-hexulose-6-phosphate formaldehyde lyase; EC 4.1.2.43 from Mycobacterium gastri
Q9LBW4: 3-hexulose-6-phosphate synthase (EC 4.1.2.43) from Mycobacterium gastri

49% id,
23% cov

H281DRAFT_01922: arabinose-5-phosphate isomerase
is similar to:
PaperBLAST

hps-phi / Q5JD63: bifunctional 3-hexulose-6-phosphate formaldehyde lyase/6-phospho-3-hexuloisomerase (EC 4.1.2.43; EC 5.3.1.27) from Thermococcus kodakarensis

29% id,
34% cov

H281DRAFT_04279: transcriptional regulator, RpiR family
is similar to:
PaperBLAST

hps-phi / Q5JD63: bifunctional 3-hexulose-6-phosphate formaldehyde lyase/6-phospho-3-hexuloisomerase (EC 4.1.2.43; EC 5.3.1.27) from Thermococcus kodakarensis

31% id,
30% cov

H281DRAFT_04594: short chain enoyl-CoA hydratase /Enoyl-CoA hydratase
is similar to:
PaperBLAST

BOXC_AROEV / Q84HH6: Benzoyl-CoA-dihydrodiol lyase; EC 4.1.2.44 from Aromatoleum evansii
boxC / Q84HH6: benzoyl-CoA-dihydrodiol lyase monomer (EC 4.1.2.44) from Azoarcus evansii
Q84HH6: 2,3-epoxybenzoyl-CoA dihydrolase (EC 4.1.2.44) from Azoarcus evansii

32% id,
28% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 26 reading frames. Except for 3 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

333973-335262 (frame +1) on H281DRAFT_scaffold00005.5
is similar to:
PaperBLAST

AHNL_LINUS / P93243: Aliphatic (R)-hydroxynitrile lyase; LuHNL; EC 4.1.2.46 from Linum usitatissimum
HNL / P93243: aliphatic (R)-hydroxynitrile lyase monomer (EC 4.1.2.46) from Linum usitatissimum
P93243: aliphatic (R)-hydroxynitrile lyase (EC 4.1.2.46) from Linum usitatissimum
Also see hits to annotated proteins above

29% id,
75% cov

149233-150210 (frame -1) on H281DRAFT_scaffold00002.2
is similar to:
PaperBLAST

HPS_METAM / Q48907: 3-hexulose-6-phosphate synthase; HPS; D-arabino-3-hexulose-6-phosphate formaldehyde lyase; EC 4.1.2.43 from Methylomonas aminofaciens

25% id,
89% cov

Q9F6B7: 3-hexulose-6-phosphate synthase (EC 4.1.2.43) from

24% id,
90% cov

94460-95500 (frame -2) on H281DRAFT_scaffold00006.6
is similar to:
PaperBLAST

AHNL_LINUS / P93243: Aliphatic (R)-hydroxynitrile lyase; LuHNL; EC 4.1.2.46 from Linum usitatissimum
HNL / P93243: aliphatic (R)-hydroxynitrile lyase monomer (EC 4.1.2.46) from Linum usitatissimum
P93243: aliphatic (R)-hydroxynitrile lyase (EC 4.1.2.46) from Linum usitatissimum
Also see hits to annotated proteins above

25% id,
80% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory