Curated BLAST for Genomes

 

Curated BLAST

Searching in Paraburkholderia bryophila 376MFSha3.1 (Burk376)

Found 15 curated entries in PaperBLAST's database that match '4.1.2.48' as complete word(s).

These curated entries have 10 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Paraburkholderia bryophila 376MFSha3.1, or try another query

H281DRAFT_04726: serine hydroxymethyltransferase
is similar to:
PaperBLAST

P0A825: low-specificity L-threonine aldolase (EC 4.1.2.48) from Escherichia coli

64% id,
100% cov

GLYA_HYDTT / D3DKC4: Serine hydroxymethyltransferase; SHMT; Serine methylase; L-threonine/L-allo-threonine aldolase; EC 2.1.2.1; EC 4.1.2.48 from Hydrogenobacter thermophilus

63% id,
95% cov

H281DRAFT_04448: L-threonine aldolase
is similar to:
PaperBLAST

O50584: low-specificity L-threonine aldolase (EC 4.1.2.48) from Pseudomonas sp.

64% id,
99% cov

A0T1V9: low-specificity L-threonine aldolase (EC 4.1.2.48) from Sinorhizobium arboris

41% id,
99% cov

LTAE_ECOLI / P75823: Low specificity L-threonine aldolase; Low specificity L-TA; EC 4.1.2.48 from Escherichia coli
LtaA / b0870: low-specificity L-threonine aldolase (EC 4.1.2.48; EC 4.1.2.5; EC 4.1.2.26; EC 4.1.2.49) from Escherichia coli
ltaE / P75823: low-specificity L-threonine aldolase (EC 4.1.2.48; EC 4.1.2.26) from Escherichia coli
P75823: low-specificity L-threonine aldolase (EC 4.1.2.48) from Escherichia coli

28% id,
95% cov

More...

H281DRAFT_03052: L-threonine aldolase
is similar to:
PaperBLAST

LTAE_ECOLI / P75823: Low specificity L-threonine aldolase; Low specificity L-TA; EC 4.1.2.48 from Escherichia coli
LtaA / b0870: low-specificity L-threonine aldolase (EC 4.1.2.48; EC 4.1.2.5; EC 4.1.2.26; EC 4.1.2.49) from Escherichia coli
ltaE / P75823: low-specificity L-threonine aldolase (EC 4.1.2.48; EC 4.1.2.26) from Escherichia coli
P75823: low-specificity L-threonine aldolase (EC 4.1.2.48) from Escherichia coli

58% id,
100% cov

ltaA / O07051: L-allo-threonine aldolase subunit (EC 4.1.2.48) from Aeromonas jandaei

56% id,
99% cov

THA2_ARATH / Q9FPH3: Probable low-specificity L-threonine aldolase 2; Threonine aldolase 2; EC 4.1.2.48 from Arabidopsis thaliana

46% id,
97% cov

More...

H281DRAFT_02468: serine hydroxymethyltransferase
is similar to:
PaperBLAST

GLYA_HYDTT / D3DKC4: Serine hydroxymethyltransferase; SHMT; Serine methylase; L-threonine/L-allo-threonine aldolase; EC 2.1.2.1; EC 4.1.2.48 from Hydrogenobacter thermophilus

59% id,
95% cov

P0A825: low-specificity L-threonine aldolase (EC 4.1.2.48) from Escherichia coli

56% id,
99% cov

H281DRAFT_00990: serine hydroxymethyltransferase (EC 2.1.2.1)
is similar to:
PaperBLAST

GLYA_HYDTT / D3DKC4: Serine hydroxymethyltransferase; SHMT; Serine methylase; L-threonine/L-allo-threonine aldolase; EC 2.1.2.1; EC 4.1.2.48 from Hydrogenobacter thermophilus

58% id,
95% cov

P0A825: low-specificity L-threonine aldolase (EC 4.1.2.48) from Escherichia coli

58% id,
95% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory