Curated BLAST for Genomes

 

Curated BLAST

Searching in Paraburkholderia bryophila 376MFSha3.1 (Burk376)

Found 48 curated entries in PaperBLAST's database that match '4.1.3.1' as complete word(s).

These curated entries have 36 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Paraburkholderia bryophila 376MFSha3.1, or try another query

H281DRAFT_00580: isocitrate lyase
is similar to:		 PaperBLAST

Pf1N1B4_4042: Isocitrate lyase (EC 4.1.3.1) from Pseudomonas fluorescens

 73% id,
99% cov

SO1484: Isocitrate lyase (EC 4.1.3.1) from Shewanella oneidensis

 70% id,
99% cov

Sama_2380: Isocitrate lyase (EC 4.1.3.1) from Shewanella amazonensis

 70% id,
99% cov

More...

H281DRAFT_06209: carboxyvinyl-carboxyphosphonate phosphorylmutase
is similar to:		 PaperBLAST

Q05957: isocitrate lyase (EC 4.1.3.1) from Dianthus caryophyllus

 37% id,
89% cov

ACEA_HALVD / D4GTL3: Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Haloferax volcanii

 34% id,
77% cov

ACEA_ECOLI / P0A9G6: Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Escherichia coli
Icl / b4015: isocitrate lyase (EC 4.1.3.1) from Escherichia coli
aceA / P0A9G6: isocitrate lyase (EC 4.1.3.1) from Escherichia coli

 27% id,
71% cov

More...

H281DRAFT_00986: 2-Methylisocitrate lyase, PEP mutase family
is similar to:		 PaperBLAST

Q05957: isocitrate lyase (EC 4.1.3.1) from Dianthus caryophyllus

 40% id,
83% cov

ACEA_HALVD / D4GTL3: Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Haloferax volcanii

 33% id,
82% cov

ACEA_CORGL / P42449: Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Corynebacterium glutamicum

 27% id,
53% cov

More...

H281DRAFT_02892: carboxyvinyl-carboxyphosphonate phosphorylmutase
is similar to:		 PaperBLAST

Q05957: isocitrate lyase (EC 4.1.3.1) from Dianthus caryophyllus

 35% id,
91% cov

ACEA1_MYCBO / P0A5H4: Isocitrate lyase 1; ICL1; Isocitrase; Isocitratase; EC 4.1.3.1 from Mycobacterium bovis
ACEA1_MYCTE / H8EVV4: Isocitrate lyase 1; ICL1; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; EC 4.1.3.1; EC 4.1.3.30 from Mycobacterium tuberculosis
ACEA1_MYCTO / P9WKK6: Isocitrate lyase 1; ICL1; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; EC 4.1.3.1; EC 4.1.3.30 from Mycobacterium tuberculosis
ACEA_MYCTU / P9WKK7: Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Mycobacterium tuberculosis
icl / P9WKK7: isocitrate lyase subunit (EC 4.1.3.1) from Mycobacterium tuberculosis
P9WKK7: isocitrate lyase (EC 4.1.3.1) from Mycobacterium tuberculosis

 30% id,
47% cov

Q8RPZ0: isocitrate lyase (EC 4.1.3.1) from Streptomyces clavuligerus

 29% id,
47% cov

More...

H281DRAFT_02542: 2-Methylisocitrate lyase, PEP mutase family
is similar to:		 PaperBLAST

Q05957: isocitrate lyase (EC 4.1.3.1) from Dianthus caryophyllus

 36% id,
87% cov

ACEA_HALVD / D4GTL3: Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Haloferax volcanii

 41% id,
59% cov

ACEA1_MYCBO / P0A5H4: Isocitrate lyase 1; ICL1; Isocitrase; Isocitratase; EC 4.1.3.1 from Mycobacterium bovis
ACEA1_MYCTE / H8EVV4: Isocitrate lyase 1; ICL1; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; EC 4.1.3.1; EC 4.1.3.30 from Mycobacterium tuberculosis
ACEA1_MYCTO / P9WKK6: Isocitrate lyase 1; ICL1; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; EC 4.1.3.1; EC 4.1.3.30 from Mycobacterium tuberculosis
ACEA_MYCTU / P9WKK7: Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Mycobacterium tuberculosis
icl / P9WKK7: isocitrate lyase subunit (EC 4.1.3.1) from Mycobacterium tuberculosis
P9WKK7: isocitrate lyase (EC 4.1.3.1) from Mycobacterium tuberculosis

 31% id,
50% cov

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H281DRAFT_00576: malate synthase
is similar to:		 PaperBLAST

GCP_CAEEL / Q10663: Bifunctional glyoxylate cycle protein; Gex-3-interacting protein 7; EC 4.1.3.1; EC 2.3.3.9 from Caenorhabditis elegans

 51% id,
54% cov

H281DRAFT_03026: phosphoenolpyruvate mutase
is similar to:		 PaperBLAST

Q05957: isocitrate lyase (EC 4.1.3.1) from Dianthus caryophyllus

 29% id,
91% cov

ACEA_HALVD / D4GTL3: Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Haloferax volcanii

 31% id,
59% cov

ACEA_LEPMC / Q86ZF1: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Leptosphaeria maculans

 23% id,
43% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

494752-495654 (frame +1) on H281DRAFT_scaffold00004.4
is similar to:		 PaperBLAST

Q05957: isocitrate lyase (EC 4.1.3.1) from Dianthus caryophyllus
Also see hits to annotated proteins above

 35% id,
94% cov

54783-56585 (frame +3) on H281DRAFT_scaffold00005.5
is similar to:		 PaperBLAST

Q05957: isocitrate lyase (EC 4.1.3.1) from Dianthus caryophyllus
Also see hits to annotated proteins above

 28% id,
97% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory