Curated BLAST for Genomes

 

Curated BLAST

Searching in Paraburkholderia bryophila 376MFSha3.1 (Burk376)

Found 59 curated entries in PaperBLAST's database that match '4.1.3.4'.

These curated entries have 34 distinct sequences.

Running ublast with E ≤ 0.01

Found 14 relevant proteins in Paraburkholderia bryophila 376MFSha3.1, or try another query

H281DRAFT_02101: hydroxymethylglutaryl-CoA lyase
is similar to:
PaperBLAST

LIUE_PSEAE / Q9I2A0: 3-hydroxy-3-isohexenylglutaryl-CoA/hydroxy-methylglutaryl-CoA lyase; HIHG-CoA lyase; HMG-CoA lyase; (S)-3-hydroxy-3-methylglutaryl-CoA acetoacetate-lyase; 3-hydroxy-3-(4-methylpent-3-en-1-yl)glutaryl-CoA acetate-lyase; EC 4.1.3.26; EC 4.1.3.4 from Pseudomonas aeruginosa
liuE / Q9I2A0: hydroxymethylglutaryl-CoA lyase subunit (EC 4.1.3.26; EC 4.1.3.4) from Pseudomonas aeruginosa

61% id,
100% cov

mvaB / GB|AAA25895.1: hydroxymethylglutaryl-CoA lyase; EC 4.1.3.4 from Pseudomonas mevalonii
mvaB / P13703: hydroxymethylglutaryl-CoA lyase monomer (EC 4.1.3.4) from Pseudomonas mevalonii

52% id,
99% cov

HMGCL_MOUSE / P38060: Hydroxymethylglutaryl-CoA lyase, mitochondrial; HL; HMG-CoA lyase; 3-hydroxy-3-methylglutarate-CoA lyase; EC 4.1.3.4 from Mus musculus

57% id,
90% cov

More...

H281DRAFT_01666: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39)
is similar to:
PaperBLAST

HOA4_PARXL / P51015: 4-hydroxy-2-oxovalerate aldolase 4; HOA 4; 4-hydroxy-2-keto-pentanoic acid aldolase 4; 4-hydroxy-2-oxohexanoate aldolase; 4-hydroxy-2-oxopentanoate aldolase 4; EC 4.1.3.39; EC 4.1.3.43 from Paraburkholderia xenovorans
P51015: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39); 4-hydroxy-2-oxohexanoate aldolase (EC 4.1.3.43) from Paraburkholderia xenovorans

56% id,
95% cov

tesG / Q83VZ3: 4-hydroxy-2-oxohexanoate aldolase (EC 4.1.3.43) from Comamonas testosteroni

52% id,
99% cov

HOA_THET8 / Q53WI0: 4-hydroxy-2-oxovalerate aldolase; HOA; 4-hydroxy-2-keto-pentanoic acid aldolase; 4-hydroxy-2-oxohexanoate aldolase; 4-hydroxy-2-oxopentanoate aldolase; EC 4.1.3.39; EC 4.1.3.43 from Thermus thermophilus
Q53WI0: 4-hydroxy-2-oxohexanoate aldolase (EC 4.1.3.43) from Thermus thermophilus

52% id,
96% cov

More...

H281DRAFT_04277: 2-keto-3-deoxy-phosphogluconate aldolase
is similar to:
PaperBLAST

Kga / b1850: KHG/KDPG aldolase (EC 4.1.2.55; EC 4.1.2.14; EC 4.1.3.42; EC 4.1.1.112) from Escherichia coli
eda / P0A955: KHG/KDPG aldolase (EC 4.1.2.55; EC 4.1.3.42; EC 4.1.1.112) from Escherichia coli
P0A955: 4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16); (4S)-4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.42) from Escherichia coli

44% id,
97% cov

H281DRAFT_03571: hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
is similar to:
PaperBLAST

HMGCL_BACSU / O34873: Hydroxymethylglutaryl-CoA lyase YngG; HL; HMG-CoA lyase; 3-hydroxy-3-methylglutarate-CoA lyase; EC 4.1.3.4 from Bacillus subtilis

43% id,
98% cov

CCL_CHLAA / A9WGE2: (R)-citramalyl-CoA lyase; EC 4.1.3.46 from Chloroflexus aurantiacus

44% id,
95% cov

SM_b21125: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) from Sinorhizobium meliloti

39% id,
99% cov

More...

H281DRAFT_04763: hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
is similar to:
PaperBLAST

SM_b21125: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) from Sinorhizobium meliloti

39% id,
96% cov

CCL_CHLAA / A9WGE2: (R)-citramalyl-CoA lyase; EC 4.1.3.46 from Chloroflexus aurantiacus

38% id,
95% cov

LIUE_PSEAE / Q9I2A0: 3-hydroxy-3-isohexenylglutaryl-CoA/hydroxy-methylglutaryl-CoA lyase; HIHG-CoA lyase; HMG-CoA lyase; (S)-3-hydroxy-3-methylglutaryl-CoA acetoacetate-lyase; 3-hydroxy-3-(4-methylpent-3-en-1-yl)glutaryl-CoA acetate-lyase; EC 4.1.3.26; EC 4.1.3.4 from Pseudomonas aeruginosa
liuE / Q9I2A0: hydroxymethylglutaryl-CoA lyase subunit (EC 4.1.3.26; EC 4.1.3.4) from Pseudomonas aeruginosa

36% id,
100% cov

More...

H281DRAFT_03708: hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
is similar to:
PaperBLAST

LIUE_PSEAE / Q9I2A0: 3-hydroxy-3-isohexenylglutaryl-CoA/hydroxy-methylglutaryl-CoA lyase; HIHG-CoA lyase; HMG-CoA lyase; (S)-3-hydroxy-3-methylglutaryl-CoA acetoacetate-lyase; 3-hydroxy-3-(4-methylpent-3-en-1-yl)glutaryl-CoA acetate-lyase; EC 4.1.3.26; EC 4.1.3.4 from Pseudomonas aeruginosa
liuE / Q9I2A0: hydroxymethylglutaryl-CoA lyase subunit (EC 4.1.3.26; EC 4.1.3.4) from Pseudomonas aeruginosa

40% id,
90% cov

SM_b21125: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) from Sinorhizobium meliloti

37% id,
97% cov

CCL_CHLAA / A9WGE2: (R)-citramalyl-CoA lyase; EC 4.1.3.46 from Chloroflexus aurantiacus

38% id,
94% cov

More...

H281DRAFT_05549: citrate lyase subunit beta / citryl-CoA lyase
is similar to:
PaperBLAST

A0A172MLA1: (S)-citramalyl-CoA lyase (EC 4.1.3.25); (R)-citramalyl-CoA lyase (EC 4.1.3.46) from Aspergillus terreus

32% id,
93% cov

H281DRAFT_02940: beta-methylmalyl-CoA/L-malyl-CoA lyase (EC 4.1.3.24)
is similar to:
PaperBLAST

A0A172MLA1: (S)-citramalyl-CoA lyase (EC 4.1.3.25); (R)-citramalyl-CoA lyase (EC 4.1.3.46) from Aspergillus terreus

29% id,
92% cov

H281DRAFT_06295: 2-keto-3-deoxy-phosphogalactonate aldolase
is similar to:
PaperBLAST

Kga / b1850: KHG/KDPG aldolase (EC 4.1.2.55; EC 4.1.2.14; EC 4.1.3.42; EC 4.1.1.112) from Escherichia coli
eda / P0A955: KHG/KDPG aldolase (EC 4.1.2.55; EC 4.1.3.42; EC 4.1.1.112) from Escherichia coli
P0A955: 4-Hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16); (4S)-4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.42) from Escherichia coli

34% id,
75% cov

H281DRAFT_01344: methylglutaconyl-CoA hydratase
is similar to:
PaperBLAST

hlyA: 3-hydroxy-3-methylglutaryl-coenzyme A lyase/3-methylglutaconyl-coenzyme A hydratase; EC 4.1.3.4; EC 4.2.1.18 from Emericella nidulans

33% id,
43% cov

H281DRAFT_01276: vanillin synthase /trans-feruloyl-CoA hydratase
is similar to:
PaperBLAST

hlyA: 3-hydroxy-3-methylglutaryl-coenzyme A lyase/3-methylglutaconyl-coenzyme A hydratase; EC 4.1.3.4; EC 4.2.1.18 from Emericella nidulans

25% id,
46% cov

H281DRAFT_02741: Enoyl-CoA hydratase/carnithine racemase
is similar to:
PaperBLAST

hlyA: 3-hydroxy-3-methylglutaryl-coenzyme A lyase/3-methylglutaconyl-coenzyme A hydratase; EC 4.1.3.4; EC 4.2.1.18 from Emericella nidulans

30% id,
36% cov

H281DRAFT_01199: Enoyl-CoA hydratase/carnithine racemase
is similar to:
PaperBLAST

hlyA: 3-hydroxy-3-methylglutaryl-coenzyme A lyase/3-methylglutaconyl-coenzyme A hydratase; EC 4.1.3.4; EC 4.2.1.18 from Emericella nidulans

31% id,
27% cov

H281DRAFT_00385: 2-isopropylmalate synthase
is similar to:
PaperBLAST

HOA4_PARXL / P51015: 4-hydroxy-2-oxovalerate aldolase 4; HOA 4; 4-hydroxy-2-keto-pentanoic acid aldolase 4; 4-hydroxy-2-oxohexanoate aldolase; 4-hydroxy-2-oxopentanoate aldolase 4; EC 4.1.3.39; EC 4.1.3.43 from Paraburkholderia xenovorans
P51015: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39); 4-hydroxy-2-oxohexanoate aldolase (EC 4.1.3.43) from Paraburkholderia xenovorans

28% id,
20% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 14 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory