Curated BLAST for Genomes

 

Curated BLAST

Searching in Paraburkholderia bryophila 376MFSha3.1 (Burk376)

Found 68 curated entries in PaperBLAST's database that match '4.2.1.10' as complete word(s).

These curated entries have 50 distinct sequences.

Running ublast with E ≤ 0.01

Found 14 relevant proteins in Paraburkholderia bryophila 376MFSha3.1, or try another query

H281DRAFT_01677: 3-dehydroquinate dehydratase
is similar to:
PaperBLAST

Q88IJ6: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Pseudomonas putida

79% id,
95% cov

G8M0G7: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Acetivibrio clariflavus

50% id,
99% cov

A8AQF2: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Citrobacter koseri

51% id,
92% cov

More...

H281DRAFT_06285: 3-dehydroquinate dehydratase
is similar to:
PaperBLAST

O30557: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Pseudomonas aeruginosa

68% id,
98% cov

Q9PH97: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Xylella fastidiosa

62% id,
99% cov

A1SZA3: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Psychromonas ingrahamii

65% id,
95% cov

More...

H281DRAFT_03215: 3-dehydroquinate dehydratase
is similar to:
PaperBLAST

O30557: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Pseudomonas aeruginosa

61% id,
94% cov

A0A124C1Y7: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Streptomyces acidiscabies

57% id,
97% cov

AROQ_STRCO / P15474: 3-dehydroquinate dehydratase; 3-dehydroquinase; Type II DHQase; EC 4.2.1.10 from Streptomyces coelicolor
P15474: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Streptomyces coelicolor

57% id,
97% cov

More...

H281DRAFT_01809: 3-dehydroquinate dehydratase
is similar to:
PaperBLAST

I0L192: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Micromonospora lupini

48% id,
96% cov

AROQ_MYCTU / P9WPX7: 3-dehydroquinate dehydratase; 3-dehydroquinase; Type II DHQase; EC 4.2.1.10 from Mycobacterium tuberculosis
P9WPX7: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Mycobacterium tuberculosis

45% id,
99% cov

A0A0H3FM50: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Klebsiella aerogenes

46% id,
95% cov

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H281DRAFT_02529: shikimate dehydrogenase
is similar to:
PaperBLAST

Q6PUG0: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Nicotiana tabacum

31% id,
49% cov

A0A5H2X4C4: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Eucalyptus camaldulensis

27% id,
50% cov

Q6PUF9: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Nicotiana tabacum

29% id,
46% cov

More...

H281DRAFT_03216: shikimate dehydrogenase (EC 1.1.1.25)
is similar to:
PaperBLAST

DHQSD_ARATH / Q9SQT8: Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic; DHQ-SDH protein; DHQase-SORase; Protein EMBRYO DEFECTIVE 3004; EC 4.2.1.10; EC 1.1.1.25 from Arabidopsis thaliana
AT3G06350 / Q9SQT8: shikimate dehydrogenase (EC 1.1.1.25; EC 4.2.1.10) from Arabidopsis thaliana
Q9SQT8: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Arabidopsis thaliana

31% id,
47% cov

ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae
ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae

24% id,
17% cov

H281DRAFT_03922: 3-phosphoshikimate 1-carboxyvinyltransferase
is similar to:
PaperBLAST

ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae
ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae

41% id,
28% cov

ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans
aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans

41% id,
27% cov

H281DRAFT_05615: 3-dehydroquinate synthase
is similar to:
PaperBLAST

ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans
aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans

38% id,
23% cov

ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae
ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae

39% id,
23% cov

H281DRAFT_01976: PTS system N-acetylglucosamine-specific IIB component, Glc family /PTS system N-acetylglucosamine-specific IIC component, Glc family
is similar to:
PaperBLAST

B9CK59: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Lancefieldella rimae

35% id,
24% cov

H281DRAFT_01853: PTS system D-glucose-specific IIB component, Glc family /PTS system D-glucose-specific IIC component, Glc family
is similar to:
PaperBLAST

B9CK59: 3-dehydroquinate dehydratase (EC 4.2.1.10) from Lancefieldella rimae

39% id,
21% cov

H281DRAFT_00679: NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family
is similar to:
PaperBLAST

A0A5H2WZU5: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Eucalyptus camaldulensis

30% id,
26% cov

H281DRAFT_05693: glutamyl-tRNA reductase
is similar to:
PaperBLAST

A0A5H2X4C4: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Eucalyptus camaldulensis

25% id,
31% cov

Q6PUF9: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Nicotiana tabacum

26% id,
29% cov

DHQSD_ARATH / Q9SQT8: Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic; DHQ-SDH protein; DHQase-SORase; Protein EMBRYO DEFECTIVE 3004; EC 4.2.1.10; EC 1.1.1.25 from Arabidopsis thaliana
AT3G06350 / Q9SQT8: shikimate dehydrogenase (EC 1.1.1.25; EC 4.2.1.10) from Arabidopsis thaliana
Q9SQT8: shikimate dehydrogenase (NADP+) (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Arabidopsis thaliana

25% id,
26% cov

H281DRAFT_05614: shikimate kinase
is similar to:
PaperBLAST

ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans
aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans

32% id,
10% cov

H281DRAFT_00372: transcriptional regulator, XRE family with shikimate kinase activity
is similar to:
PaperBLAST

ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans
aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans

30% id,
8% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 10 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

35827-37053 (frame +1) on H281DRAFT_scaffold00014.14
is similar to:
PaperBLAST

ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans
aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans
Also see hits to annotated proteins above

37% id,
25% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory