Curated BLAST for Genomes

 

Curated BLAST

Searching in Paraburkholderia bryophila 376MFSha3.1 (Burk376)

Found 2 curated entries in PaperBLAST's database that match '4.2.1.117'.

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Paraburkholderia bryophila 376MFSha3.1, or try another query

H281DRAFT_02981: aconitase /2-methylcitrate dehydratase (trans-methylaconitate-forming)
is similar to:
PaperBLAST

ACND_SHEON / Q8EJW3: 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming); Aconitate hydratase; ACN; Aconitase; EC 4.2.1.117; EC 4.2.1.3 from Shewanella oneidensis
Q8EJW3: 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) (EC 4.2.1.117) from Shewanella oneidensis

83% id,
99% cov

H281DRAFT_06210: aconitate hydratase
is similar to:
PaperBLAST

ACND_SHEON / Q8EJW3: 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming); Aconitate hydratase; ACN; Aconitase; EC 4.2.1.117; EC 4.2.1.3 from Shewanella oneidensis
Q8EJW3: 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) (EC 4.2.1.117) from Shewanella oneidensis

44% id,
97% cov

H281DRAFT_06606: aconitase
is similar to:
PaperBLAST

ACND_SHEON / Q8EJW3: 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming); Aconitate hydratase; ACN; Aconitase; EC 4.2.1.117; EC 4.2.1.3 from Shewanella oneidensis
Q8EJW3: 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) (EC 4.2.1.117) from Shewanella oneidensis

41% id,
94% cov

H281DRAFT_05063: 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit
is similar to:
PaperBLAST

ACND_SHEON / Q8EJW3: 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming); Aconitate hydratase; ACN; Aconitase; EC 4.2.1.117; EC 4.2.1.3 from Shewanella oneidensis
Q8EJW3: 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) (EC 4.2.1.117) from Shewanella oneidensis

30% id,
43% cov

H281DRAFT_02540: 3-isopropylmalate dehydratase, small subunit (EC 4.2.1.33)
is similar to:
PaperBLAST

ACND_SHEON / Q8EJW3: 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming); Aconitate hydratase; ACN; Aconitase; EC 4.2.1.117; EC 4.2.1.3 from Shewanella oneidensis
Q8EJW3: 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) (EC 4.2.1.117) from Shewanella oneidensis

29% id,
14% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory