Curated BLAST for Genomes

 

Curated BLAST

Searching in Paraburkholderia bryophila 376MFSha3.1 (Burk376)

Found 6 curated entries in PaperBLAST's database that match '4.2.1.140' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Paraburkholderia bryophila 376MFSha3.1, or try another query

H281DRAFT_04215: galactonate dehydratase
is similar to:
PaperBLAST

YidU / b4478: D-galactonate dehydratase (EC 4.2.1.140; EC 4.2.1.6) from Escherichia coli
dgoD / Q6BF17: D-galactonate dehydratase (EC 4.2.1.140) from Escherichia coli

64% id,
100% cov

GAD_SACS2 / Q97U27: D-gluconate/D-galactonate dehydratase; GAD; GNAD; EC 4.2.1.140; EC 4.2.1.39; EC 4.2.1.6 from Saccharolobus solfataricus
Q97U27: gluconate/galactonate dehydratase (EC 4.2.1.140) from Saccharolobus solfataricus

34% id,
93% cov

GAD_PICTO / Q6L1T2: D-gluconate/D-galactonate dehydratase; GAD; GNAD; EC 4.2.1.140; EC 4.2.1.39; EC 4.2.1.6 from Picrophilus torridus
Q6L1T2: gluconate/galactonate dehydratase (EC 4.2.1.140); gluconate dehydratase (EC 4.2.1.39) from Picrophilus torridus

29% id,
91% cov

H281DRAFT_01518: D-mannonate dehydratase (EC 4.2.1.8)
is similar to:
PaperBLAST

YidU / b4478: D-galactonate dehydratase (EC 4.2.1.140; EC 4.2.1.6) from Escherichia coli
dgoD / Q6BF17: D-galactonate dehydratase (EC 4.2.1.140) from Escherichia coli

33% id,
100% cov

GAD_SACS2 / Q97U27: D-gluconate/D-galactonate dehydratase; GAD; GNAD; EC 4.2.1.140; EC 4.2.1.39; EC 4.2.1.6 from Saccharolobus solfataricus
Q97U27: gluconate/galactonate dehydratase (EC 4.2.1.140) from Saccharolobus solfataricus

31% id,
34% cov

GAD_PICTO / Q6L1T2: D-gluconate/D-galactonate dehydratase; GAD; GNAD; EC 4.2.1.140; EC 4.2.1.39; EC 4.2.1.6 from Picrophilus torridus
Q6L1T2: gluconate/galactonate dehydratase (EC 4.2.1.140); gluconate dehydratase (EC 4.2.1.39) from Picrophilus torridus

27% id,
35% cov

H281DRAFT_00974: L-alanine-DL-glutamate epimerase
is similar to:
PaperBLAST

GAD_SACS2 / Q97U27: D-gluconate/D-galactonate dehydratase; GAD; GNAD; EC 4.2.1.140; EC 4.2.1.39; EC 4.2.1.6 from Saccharolobus solfataricus
Q97U27: gluconate/galactonate dehydratase (EC 4.2.1.140) from Saccharolobus solfataricus

31% id,
97% cov

GAD_PICTO / Q6L1T2: D-gluconate/D-galactonate dehydratase; GAD; GNAD; EC 4.2.1.140; EC 4.2.1.39; EC 4.2.1.6 from Picrophilus torridus
Q6L1T2: gluconate/galactonate dehydratase (EC 4.2.1.140); gluconate dehydratase (EC 4.2.1.39) from Picrophilus torridus

32% id,
89% cov

YidU / b4478: D-galactonate dehydratase (EC 4.2.1.140; EC 4.2.1.6) from Escherichia coli
dgoD / Q6BF17: D-galactonate dehydratase (EC 4.2.1.140) from Escherichia coli

34% id,
54% cov

More...

H281DRAFT_06497: L-alanine-DL-glutamate epimerase
is similar to:
PaperBLAST

GAD_SACS2 / Q97U27: D-gluconate/D-galactonate dehydratase; GAD; GNAD; EC 4.2.1.140; EC 4.2.1.39; EC 4.2.1.6 from Saccharolobus solfataricus
Q97U27: gluconate/galactonate dehydratase (EC 4.2.1.140) from Saccharolobus solfataricus

29% id,
85% cov

GAD_PICTO / Q6L1T2: D-gluconate/D-galactonate dehydratase; GAD; GNAD; EC 4.2.1.140; EC 4.2.1.39; EC 4.2.1.6 from Picrophilus torridus
Q6L1T2: gluconate/galactonate dehydratase (EC 4.2.1.140); gluconate dehydratase (EC 4.2.1.39) from Picrophilus torridus

26% id,
93% cov

YidU / b4478: D-galactonate dehydratase (EC 4.2.1.140; EC 4.2.1.6) from Escherichia coli
dgoD / Q6BF17: D-galactonate dehydratase (EC 4.2.1.140) from Escherichia coli

31% id,
74% cov

H281DRAFT_05472: L-alanine-DL-glutamate epimerase
is similar to:
PaperBLAST

YidU / b4478: D-galactonate dehydratase (EC 4.2.1.140; EC 4.2.1.6) from Escherichia coli
dgoD / Q6BF17: D-galactonate dehydratase (EC 4.2.1.140) from Escherichia coli

26% id,
93% cov

H281DRAFT_01228: L-rhamnonate dehydratase
is similar to:
PaperBLAST

GAD_PICTO / Q6L1T2: D-gluconate/D-galactonate dehydratase; GAD; GNAD; EC 4.2.1.140; EC 4.2.1.39; EC 4.2.1.6 from Picrophilus torridus
Q6L1T2: gluconate/galactonate dehydratase (EC 4.2.1.140); gluconate dehydratase (EC 4.2.1.39) from Picrophilus torridus

26% id,
85% cov

YidU / b4478: D-galactonate dehydratase (EC 4.2.1.140; EC 4.2.1.6) from Escherichia coli
dgoD / Q6BF17: D-galactonate dehydratase (EC 4.2.1.140) from Escherichia coli

30% id,
71% cov

H281DRAFT_01645: muconate cycloisomerase (EC 5.5.1.1)
is similar to:
PaperBLAST

GAD_SACS2 / Q97U27: D-gluconate/D-galactonate dehydratase; GAD; GNAD; EC 4.2.1.140; EC 4.2.1.39; EC 4.2.1.6 from Saccharolobus solfataricus
Q97U27: gluconate/galactonate dehydratase (EC 4.2.1.140) from Saccharolobus solfataricus

20% id,
93% cov

H281DRAFT_03815: D-glucarate dehydratase
is similar to:
PaperBLAST

GAD_SACS2 / Q97U27: D-gluconate/D-galactonate dehydratase; GAD; GNAD; EC 4.2.1.140; EC 4.2.1.39; EC 4.2.1.6 from Saccharolobus solfataricus
Q97U27: gluconate/galactonate dehydratase (EC 4.2.1.140) from Saccharolobus solfataricus

23% id,
72% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory