Curated BLAST for Genomes

 

Curated BLAST

Searching in Paraburkholderia bryophila 376MFSha3.1 (Burk376)

Found 7 curated entries in PaperBLAST's database that match '4.3.1.1' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Paraburkholderia bryophila 376MFSha3.1, or try another query

H281DRAFT_04314: fumarase, class II
is similar to:
PaperBLAST

Q9LCC6: aspartate ammonia-lyase (EC 4.3.1.1) from Bacillus sp.

43% id,
98% cov

Q0PC50: aspartate ammonia-lyase (EC 4.3.1.1) from Campylobacter jejuni

41% id,
98% cov

Q9HTD7: aspartate ammonia-lyase (EC 4.3.1.1) from Pseudomonas aeruginosa

43% id,
91% cov

More...

H281DRAFT_00025: fumarase, class II
is similar to:
PaperBLAST

Q9LCC6: aspartate ammonia-lyase (EC 4.3.1.1) from Bacillus sp.

40% id,
99% cov

Q0PC50: aspartate ammonia-lyase (EC 4.3.1.1) from Campylobacter jejuni

37% id,
98% cov

Q9HTD7: aspartate ammonia-lyase (EC 4.3.1.1) from Pseudomonas aeruginosa

37% id,
98% cov

More...

H281DRAFT_02592: fumarase, class II
is similar to:
PaperBLAST

Q9LCC6: aspartate ammonia-lyase (EC 4.3.1.1) from Bacillus sp.

40% id,
99% cov

Q0PC50: aspartate ammonia-lyase (EC 4.3.1.1) from Campylobacter jejuni

38% id,
99% cov

Q9HTD7: aspartate ammonia-lyase (EC 4.3.1.1) from Pseudomonas aeruginosa

37% id,
95% cov

More...

H281DRAFT_01595: 3-carboxy-cis,cis-muconate cycloisomerase
is similar to:
PaperBLAST

Q9HTD7: aspartate ammonia-lyase (EC 4.3.1.1) from Pseudomonas aeruginosa

26% id,
88% cov

Q9LCC6: aspartate ammonia-lyase (EC 4.3.1.1) from Bacillus sp.

22% id,
70% cov

Q0PC50: aspartate ammonia-lyase (EC 4.3.1.1) from Campylobacter jejuni

24% id,
60% cov

H281DRAFT_02594: 3-carboxy-cis,cis-muconate cycloisomerase
is similar to:
PaperBLAST

Q0PC50: aspartate ammonia-lyase (EC 4.3.1.1) from Campylobacter jejuni

25% id,
43% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory