Curated BLAST for Genomes


Curated BLAST

Searching in Paraburkholderia bryophila 376MFSha3.1 (Burk376)

Found 7 curated entries in PaperBLAST's database that match ''.

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 0 relevant proteins in Paraburkholderia bryophila 376MFSha3.1, or try another query

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

21629-22642 (frame +2) on H281DRAFT_scaffold00016.16
is similar to:

OCD_AGRT4 / Q59701: Ornithine cyclodeaminase; OCD; EC from Agrobacterium tumefaciens

24% id,
91% cov

OCD_AGRFC / P09773: Ornithine cyclodeaminase; OCD; EC from Agrobacterium fabrum
arcB / P09773: ornithine cyclodeaminase (EC from Agrobacterium fabrum

23% id,
72% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory