Curated BLAST for Genomes

 

Curated BLAST

Searching in Paraburkholderia bryophila 376MFSha3.1 (Burk376)

Found 9 curated entries in PaperBLAST's database that match '5.3.3.4' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Paraburkholderia bryophila 376MFSha3.1, or try another query

H281DRAFT_01071: muconolactone delta-isomerase (EC 5.3.3.4)
is similar to:
PaperBLAST

CATC_CUPPJ / P80573: Muconolactone Delta-isomerase; MIase; EC 5.3.3.4 from Cupriavidus pinatubonensis
catC / P80573: muconolactone isomerase monomer (EC 5.3.3.4) from Cupriavidus pinatubonensis

76% id,
100% cov

mmlJ / Q471R4: methylmuconolactone isomerase monomer (EC 5.3.3.4) from Cupriavidus pinatubonensis

57% id,
100% cov

C5MR75: muconolactone DELTA-isomerase (EC 5.3.3.4) from Pseudomonas reinekei

56% id,
99% cov

More...

H281DRAFT_01644: muconolactone delta-isomerase
is similar to:
PaperBLAST

CATC_CUPPJ / P80573: Muconolactone Delta-isomerase; MIase; EC 5.3.3.4 from Cupriavidus pinatubonensis
catC / P80573: muconolactone isomerase monomer (EC 5.3.3.4) from Cupriavidus pinatubonensis

71% id,
100% cov

PfGW456L13_3823: Muconolactone isomerase (EC 5.3.3.4) from Pseudomonas fluorescens

65% id,
99% cov

catC / A0F0B4: muconolactone isomerase (EC 5.3.3.4) from Pseudomonas reinekei

63% id,
99% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory