Curated BLAST for Genomes

 

Curated BLAST

Searching in Paraburkholderia bryophila 376MFSha3.1 (Burk376)

Found 4 curated entries in PaperBLAST's database that match '5.3.3.7' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Paraburkholderia bryophila 376MFSha3.1, or try another query

H281DRAFT_02982: 2-methylaconitate cis-trans isomerase
is similar to:
PaperBLAST

Q8EJW4: aconitate DELTA-isomerase (EC 5.3.3.7) from Shewanella oneidensis

82% id,
99% cov

ADI1 / A0A0U2X0E4: aconitate-Δ-isomerase 1 (EC 5.3.3.7) from Ustilago maydis

31% id,
80% cov

H281DRAFT_03337: molybdate transport system substrate-binding protein
is similar to:
PaperBLAST

AIS_PSESP / A0A0A1H8I4: Aconitate isomerase; AI; EC 5.3.3.7 from Pseudomonas sp.
A0A0A1H8I4: aconitate DELTA-isomerase (EC 5.3.3.7) from Pseudomonas sp.

47% id,
96% cov

H281DRAFT_02738: molybdate transport system substrate-binding protein
is similar to:
PaperBLAST

AIS_PSESP / A0A0A1H8I4: Aconitate isomerase; AI; EC 5.3.3.7 from Pseudomonas sp.
A0A0A1H8I4: aconitate DELTA-isomerase (EC 5.3.3.7) from Pseudomonas sp.

39% id,
95% cov

H281DRAFT_01376: 4-oxalomesaconate tautomerase
is similar to:
PaperBLAST

Q8EJW4: aconitate DELTA-isomerase (EC 5.3.3.7) from Shewanella oneidensis

36% id,
98% cov

ADI1 / A0A0U2X0E4: aconitate-Δ-isomerase 1 (EC 5.3.3.7) from Ustilago maydis

42% id,
74% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory