Curated BLAST for Genomes

 

Curated BLAST

Searching in Paraburkholderia bryophila 376MFSha3.1 (Burk376)

Found 9 curated entries in PaperBLAST's database that match '5.4.2.6' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Paraburkholderia bryophila 376MFSha3.1, or try another query

H281DRAFT_04231: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
is similar to:
PaperBLAST

PGMB_LACLA / P71447: Beta-phosphoglucomutase; Beta-PGM; EC 5.4.2.6 from Lactococcus lactis
pgmB / P71447: β-phosphoglucomutase (EC 5.4.2.6) from Lactococcus lactis
P71447: beta-Phosphoglucomutase (EC 5.4.2.6) from Lactococcus lactis

28% id,
90% cov

PGMB_BACSU / O06995: Beta-phosphoglucomutase; Beta-PGM; EC 5.4.2.6 from Bacillus subtilis

26% id,
82% cov

H281DRAFT_02444: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
is similar to:
PaperBLAST

PGMB_ECOLI / P77366: Beta-phosphoglucomutase; Beta-PGM; EC 5.4.2.6 from Escherichia coli
ycjU / P77366: β-phosphoglucomutase (EC 5.4.2.6) from Escherichia coli
P77366: beta-Phosphoglucomutase (EC 5.4.2.6) from Escherichia coli

28% id,
88% cov

PGMB_LACLA / P71447: Beta-phosphoglucomutase; Beta-PGM; EC 5.4.2.6 from Lactococcus lactis
pgmB / P71447: β-phosphoglucomutase (EC 5.4.2.6) from Lactococcus lactis
P71447: beta-Phosphoglucomutase (EC 5.4.2.6) from Lactococcus lactis

27% id,
88% cov

H281DRAFT_03167: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
is similar to:
PaperBLAST

PGMB_LACLA / P71447: Beta-phosphoglucomutase; Beta-PGM; EC 5.4.2.6 from Lactococcus lactis
pgmB / P71447: β-phosphoglucomutase (EC 5.4.2.6) from Lactococcus lactis
P71447: beta-Phosphoglucomutase (EC 5.4.2.6) from Lactococcus lactis

27% id,
84% cov

H281DRAFT_04156: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
is similar to:
PaperBLAST

PGMB_ECOLI / P77366: Beta-phosphoglucomutase; Beta-PGM; EC 5.4.2.6 from Escherichia coli
ycjU / P77366: β-phosphoglucomutase (EC 5.4.2.6) from Escherichia coli
P77366: beta-Phosphoglucomutase (EC 5.4.2.6) from Escherichia coli

31% id,
66% cov

PGMB_LACLA / P71447: Beta-phosphoglucomutase; Beta-PGM; EC 5.4.2.6 from Lactococcus lactis
pgmB / P71447: β-phosphoglucomutase (EC 5.4.2.6) from Lactococcus lactis
P71447: beta-Phosphoglucomutase (EC 5.4.2.6) from Lactococcus lactis

24% id,
83% cov

PGMB_BACSU / O06995: Beta-phosphoglucomutase; Beta-PGM; EC 5.4.2.6 from Bacillus subtilis

30% id,
54% cov

H281DRAFT_01339: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
is similar to:
PaperBLAST

PGMB_LACLA / P71447: Beta-phosphoglucomutase; Beta-PGM; EC 5.4.2.6 from Lactococcus lactis
pgmB / P71447: β-phosphoglucomutase (EC 5.4.2.6) from Lactococcus lactis
P71447: beta-Phosphoglucomutase (EC 5.4.2.6) from Lactococcus lactis

25% id,
81% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory