Curated BLAST for Genomes

 

Curated BLAST

Searching in Paraburkholderia bryophila 376MFSha3.1 (Burk376)

Found 60 curated entries in PaperBLAST's database that match 'Serine hydroxymethyltransferase' as complete word(s).

These curated entries have 48 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Paraburkholderia bryophila 376MFSha3.1, or try another query

H281DRAFT_04726: serine hydroxymethyltransferase
is similar to:
PaperBLAST

4n0wA / B4ECY9: X-ray crystal structure of a serine hydroxymethyltransferase from burkholderia cenocepacia with covalently attached pyridoxal phosphate

94% id,
100% cov

GLYA_SALTY / P0A2E1: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Salmonella typhimurium
glyA: serine hydroxymethyltransferase; EC 2.1.2.1 from Salmonella enterica

65% id,
100% cov

GLYA_ECOLI / P0A825: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Escherichia coli
GlyA / b2551: serine hydroxymethyltransferase (EC 2.1.2.1) from Escherichia coli
glyA / RF|NP_417046: serine hydroxymethyltransferase; EC 2.1.2.1 from Escherichia coli
glyA / P0A825: serine hydroxymethyltransferase (EC 2.1.2.1) from Escherichia coli
1dfoB / P0A825: Crystal structure at 2.4 angstrom resolution of e. Coli serine hydroxymethyltransferase in complex with glycine and 5-formyl tetrahydrofolate

64% id,
100% cov

More...

H281DRAFT_02468: serine hydroxymethyltransferase
is similar to:
PaperBLAST

GLYA2_BURP1 / Q3JGP5: Serine hydroxymethyltransferase 2; SHMT 2; Serine methylase 2; EC 2.1.2.1 from Burkholderia pseudomallei

89% id,
100% cov

glyA / P34895: serine hydroxymethyltransferase subunit (EC 2.1.2.1) from Hyphomicrobium methylovorum

66% id,
98% cov

2dkjA / Q5SI56: Crystal structure of t.Th.Hb8 serine hydroxymethyltransferase

59% id,
100% cov

More...

H281DRAFT_00990: serine hydroxymethyltransferase (EC 2.1.2.1)
is similar to:
PaperBLAST

GLYA2_BURP1 / Q3JGP5: Serine hydroxymethyltransferase 2; SHMT 2; Serine methylase 2; EC 2.1.2.1 from Burkholderia pseudomallei

74% id,
100% cov

glyA / P34895: serine hydroxymethyltransferase subunit (EC 2.1.2.1) from Hyphomicrobium methylovorum

66% id,
98% cov

1kkjA / Q7SIB6: Crystal structure of serine hydroxymethyltransferase from b.Stearothermophilus

61% id,
99% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory