Curated BLAST for Genomes

 

Curated BLAST

Searching in Paraburkholderia bryophila 376MFSha3.1 (Burk376)

Found 22 curated entries in PaperBLAST's database that match 'argininosuccinate lyase' as complete word(s).

These curated entries have 19 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Paraburkholderia bryophila 376MFSha3.1, or try another query

H281DRAFT_00194: argininosuccinate lyase
is similar to:
PaperBLAST

argH / BAC65282.1: argininosuccinate lyase from Burkholderia multivorans

92% id,
100% cov

ARLY_NOSP7 / Q9LAE5: Argininosuccinate lyase; ASAL; ASL; Arginosuccinase; EC 4.3.2.1 from Nostoc punctiforme
Q9LAE5: argininosuccinate lyase (EC 4.3.2.1) from Nostoc sp.

50% id,
99% cov

2e9fB / Q5SLL0: Crystal structure of t.Th.Hb8 argininosuccinate lyase complexed with l-arginine

49% id,
99% cov

More...

H281DRAFT_01595: 3-carboxy-cis,cis-muconate cycloisomerase
is similar to:
PaperBLAST

6ienB / P9WPY7: Substrate/product bound argininosuccinate lyase from mycobacterium tuberculosis

24% id,
90% cov

P9WPY7: argininosuccinate lyase (EC 4.3.2.1) from Mycobacterium tuberculosis

24% id,
87% cov

argH / CAA88927.2: argininosuccinate lyase from Streptomyces clavuligerus

30% id,
59% cov

H281DRAFT_02594: 3-carboxy-cis,cis-muconate cycloisomerase
is similar to:
PaperBLAST

ARG7 / CAA09001.1: argininosuccinate lyase from Chlamydomonas reinhardtii

26% id,
84% cov

Q9P870: argininosuccinate lyase (EC 4.3.2.1) from Agaricus bisporus

24% id,
90% cov

6ienB / P9WPY7: Substrate/product bound argininosuccinate lyase from mycobacterium tuberculosis

27% id,
73% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

167692-169110 (frame -1) on H281DRAFT_scaffold00004.4
is similar to:
PaperBLAST

ARG7 / CAA09001.1: argininosuccinate lyase from Chlamydomonas reinhardtii
Also see hits to annotated proteins above

26% id,
88% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory