Curated BLAST for Genomes

 

Curated BLAST

Searching in Paraburkholderia bryophila 376MFSha3.1 (Burk376)

Found 4 curated entries in PaperBLAST's database that match 'carbamoyl-phosphate synthase%large' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Paraburkholderia bryophila 376MFSha3.1, or try another query

H281DRAFT_04403: carbamoyl-phosphate synthase large subunit
is similar to:
PaperBLAST

CARB_ARATH / Q42601: Carbamoyl-phosphate synthase large chain, chloroplastic; Carbamoyl-phosphate synthetase ammonia chain; Protein VENOSA 3; EC 6.3.5.5 from Arabidopsis thaliana

58% id,
91% cov

CARB_BACSU / P25994: Carbamoyl-phosphate synthase pyrimidine-specific large chain; Carbamoyl-phosphate synthetase ammonia chain; EC 6.3.5.5 from Bacillus subtilis

51% id,
98% cov

carB / CAB56843.1: carbamoyl-phosphate synthase large subunit from Lactobacillus plantarum

45% id,
99% cov

More...

H281DRAFT_06283: biotin carboxylase
is similar to:
PaperBLAST

CARB_BACSU / P25994: Carbamoyl-phosphate synthase pyrimidine-specific large chain; Carbamoyl-phosphate synthetase ammonia chain; EC 6.3.5.5 from Bacillus subtilis

24% id,
27% cov

CARB_ARATH / Q42601: Carbamoyl-phosphate synthase large chain, chloroplastic; Carbamoyl-phosphate synthetase ammonia chain; Protein VENOSA 3; EC 6.3.5.5 from Arabidopsis thaliana

22% id,
18% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

119347-122694 (frame +1) on H281DRAFT_scaffold00008.8
is similar to:
PaperBLAST

CARB_ARATH / Q42601: Carbamoyl-phosphate synthase large chain, chloroplastic; Carbamoyl-phosphate synthetase ammonia chain; Protein VENOSA 3; EC 6.3.5.5 from Arabidopsis thaliana
Also see hits to annotated proteins above

58% id,
92% cov

CARB_YEAST / P03965: Carbamoyl-phosphate synthase arginine-specific large chain; Arginine-specific carbamoyl-phosphate synthetase, ammonia chain; EC 6.3.5.5 from Saccharomyces cerevisiae
Also see hits to annotated proteins above

40% id,
94% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory