Curated BLAST for Genomes

 

Curated BLAST

Searching in Paraburkholderia bryophila 376MFSha3.1 (Burk376)

Found 1 curated entries in PaperBLAST's database that match 'cytochrome%deoxyribose dehydrogenase' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 9 relevant proteins in Paraburkholderia bryophila 376MFSha3.1, or try another query

H281DRAFT_05401: Cytochrome c, mono- and diheme variants
is similar to:
PaperBLAST

PS417_10880: cytochrome c component of deoxyribose dehydrogenase from Pseudomonas simiae

53% id,
89% cov

H281DRAFT_01762: Cytochrome c, mono- and diheme variants
is similar to:
PaperBLAST

PS417_10880: cytochrome c component of deoxyribose dehydrogenase from Pseudomonas simiae

46% id,
96% cov

H281DRAFT_03306: Cytochrome c, mono- and diheme variants
is similar to:
PaperBLAST

PS417_10880: cytochrome c component of deoxyribose dehydrogenase from Pseudomonas simiae

44% id,
96% cov

H281DRAFT_02833: Cytochrome c, mono- and diheme variants
is similar to:
PaperBLAST

PS417_10880: cytochrome c component of deoxyribose dehydrogenase from Pseudomonas simiae

43% id,
92% cov

H281DRAFT_01904: Cytochrome c, mono- and diheme variants
is similar to:
PaperBLAST

PS417_10880: cytochrome c component of deoxyribose dehydrogenase from Pseudomonas simiae

38% id,
94% cov

H281DRAFT_01582: nicotinate dehydrogenase subunit B
is similar to:
PaperBLAST

PS417_10880: cytochrome c component of deoxyribose dehydrogenase from Pseudomonas simiae

37% id,
95% cov

H281DRAFT_04220: Cytochrome c, mono- and diheme variants
is similar to:
PaperBLAST

PS417_10880: cytochrome c component of deoxyribose dehydrogenase from Pseudomonas simiae

39% id,
89% cov

H281DRAFT_03384: Cytochrome c, mono- and diheme variants
is similar to:
PaperBLAST

PS417_10880: cytochrome c component of deoxyribose dehydrogenase from Pseudomonas simiae

37% id,
96% cov

H281DRAFT_03074: cytochrome c
is similar to:
PaperBLAST

PS417_10880: cytochrome c component of deoxyribose dehydrogenase from Pseudomonas simiae

35% id,
13% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory