Curated BLAST for Genomes

 

Curated BLAST

Searching in Paraburkholderia bryophila 376MFSha3.1 (Burk376)

Found 9 curated entries in PaperBLAST's database that match 'hisF' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Paraburkholderia bryophila 376MFSha3.1, or try another query

H281DRAFT_05659: imidazole glycerol phosphate synthase subunit hisF
is similar to:
PaperBLAST

HIS6_THET8 / Q7SIB9: Imidazole glycerol phosphate synthase subunit HisF; IGP synthase cyclase subunit; IGP synthase subunit HisF; ImGP synthase subunit HisF; IGPS subunit HisF; EC 4.3.2.10 from Thermus thermophilus

62% id,
100% cov

1h5yA / Q8ZY16: Hisf protein from pyrobaculum aerophilum

53% id,
100% cov

1h5yB / Q8ZY16: Hisf protein from pyrobaculum aerophilum

53% id,
99% cov

More...

H281DRAFT_05658: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
is similar to:
PaperBLAST

1h5yA / Q8ZY16: Hisf protein from pyrobaculum aerophilum

31% id,
94% cov

1h5yB / Q8ZY16: Hisf protein from pyrobaculum aerophilum

31% id,
94% cov

2a0nA / Q9X0C6: Crystal structure of imidazole glycerol phosphate synthase subunit hisf (ec 4.1.3.-) (Tm1036) from thermotoga maritima at 1.64 a resolution

29% id,
91% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory