Curated BLAST for Genomes

 

Curated BLAST

Searching in Paraburkholderia bryophila 376MFSha3.1 (Burk376)

Found 3 curated entries in PaperBLAST's database that match 'homoaconitase large subunit' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Paraburkholderia bryophila 376MFSha3.1, or try another query

H281DRAFT_02541: 3-isopropylmalate dehydratase, large subunit (EC 4.2.1.33)
is similar to:
PaperBLAST

HACA_METJA / Q58409: Methanogen homoaconitase large subunit; HACN; Homoaconitate hydratase; EC 4.2.1.114 from Methanocaldococcus jannaschii

32% id,
99% cov

HACA_THET2 / Q9ZNE0: Homoaconitase large subunit; HACN; Homoaconitate hydratase; EC 4.2.1.36 from Thermus thermophilus
lysT / Q9ZNE0: homoaconitase large subunit (EC 4.2.1.36) from Thermus thermophilus

31% id,
98% cov

HACA_THET2 / Q9ZNE0: Homoaconitase large subunit; HACN; Homoaconitate hydratase; EC 4.2.1.36 from Thermus thermophilus
lysT / Q9ZNE0: homoaconitase large subunit (EC 4.2.1.36) from Thermus thermophilus

47% id,
32% cov

H281DRAFT_05063: 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit
is similar to:
PaperBLAST

HACA_METJA / Q58409: Methanogen homoaconitase large subunit; HACN; Homoaconitate hydratase; EC 4.2.1.114 from Methanocaldococcus jannaschii

29% id,
99% cov

HACA_THET2 / Q9ZNE0: Homoaconitase large subunit; HACN; Homoaconitate hydratase; EC 4.2.1.36 from Thermus thermophilus
lysT / Q9ZNE0: homoaconitase large subunit (EC 4.2.1.36) from Thermus thermophilus

29% id,
99% cov

H281DRAFT_06075: 3-isopropylmalate dehydratase, large subunit
is similar to:
PaperBLAST

HACA_THET2 / Q9ZNE0: Homoaconitase large subunit; HACN; Homoaconitate hydratase; EC 4.2.1.36 from Thermus thermophilus
lysT / Q9ZNE0: homoaconitase large subunit (EC 4.2.1.36) from Thermus thermophilus

31% id,
78% cov

HACA_METJA / Q58409: Methanogen homoaconitase large subunit; HACN; Homoaconitate hydratase; EC 4.2.1.114 from Methanocaldococcus jannaschii

32% id,
68% cov

HACA_METJA / Q58409: Methanogen homoaconitase large subunit; HACN; Homoaconitate hydratase; EC 4.2.1.114 from Methanocaldococcus jannaschii

40% id,
32% cov

H281DRAFT_02981: aconitase /2-methylcitrate dehydratase (trans-methylaconitate-forming)
is similar to:
PaperBLAST

HACA_THET2 / Q9ZNE0: Homoaconitase large subunit; HACN; Homoaconitate hydratase; EC 4.2.1.36 from Thermus thermophilus
lysT / Q9ZNE0: homoaconitase large subunit (EC 4.2.1.36) from Thermus thermophilus

26% id,
85% cov

H281DRAFT_06606: aconitase
is similar to:
PaperBLAST

HACA_THET2 / Q9ZNE0: Homoaconitase large subunit; HACN; Homoaconitate hydratase; EC 4.2.1.36 from Thermus thermophilus
lysT / Q9ZNE0: homoaconitase large subunit (EC 4.2.1.36) from Thermus thermophilus

27% id,
43% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory