Curated BLAST for Genomes

 

Curated BLAST

Searching in Caulobacter crescentus NA1000 (Caulo)

Found 64 curated entries in PaperBLAST's database that match '1.1.1.27' as complete word(s).

These curated entries have 50 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Caulobacter crescentus NA1000, or try another query

CCNA_03770: malate dehydrogenase
is similar to:
PaperBLAST

Q8I8U5: L-lactate dehydrogenase (EC 1.1.1.27) from Eimeria acervulina

51% id,
98% cov

Q27797: L-lactate dehydrogenase (EC 1.1.1.27) from Toxoplasma gondii

51% id,
98% cov

Q8I8U4: L-lactate dehydrogenase (EC 1.1.1.27) from Eimeria tenella

48% id,
98% cov

More...

CCNA_02357: methylmalonic acid semialdehyde dehydrogenase
is similar to:
PaperBLAST

I3VSF1: alcohol dehydrogenase (EC 1.1.1.1); L-lactate dehydrogenase (EC 1.1.1.27); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum

23% id,
47% cov

CCNA_01360: malonate-semialdehyde dehydrogenase IolA
is similar to:
PaperBLAST

I3VSF1: alcohol dehydrogenase (EC 1.1.1.1); L-lactate dehydrogenase (EC 1.1.1.27); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum

23% id,
46% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory