Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Caulobacter crescentus NA1000 (Caulo)

Found 31 curated entries in PaperBLAST's database that match '1.1.1.28' as complete word(s).

These curated entries have 24 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Caulobacter crescentus NA1000, or try another query

CCNA_02230: gluconate 2-dehydrogenase is similar to:	PaperBLAST
2KGR_VITVI / A5CAL1: Glyoxylate/hydroxypyruvate/pyruvate reductase 2KGR; 2-keto-L-gulonate reductase; Vv2KGR; EC 1.1.1.26; EC 1.1.1.28; EC 1.1.1.79; EC 1.1.1.- from Vitis vinifera	34% id, 100% cov
Q9I530: D-lactate dehydrogenase (EC 1.1.1.28) from Pseudomonas aeruginosa	32% id, 81% cov
F8A9V0: D-lactate dehydrogenase (EC 1.1.1.28) from Thermodesulfatator indicus	33% id, 76% cov
CH_091801: D-lactate dehydrogenase; EC 1.1.1.28 from Leuconostoc mesenteroides D-ldh / P51011: D-lactate dehydrogenase subunit (EC 1.1.1.28) from Leuconostoc mesenteroides	26% id, 96% cov
HtpH / b1380: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli ldhA: D-lactate dehydrogenase; EC 1.1.1.28 from Escherichia coli ldhA / P52643: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli	30% id, 81% cov
A0A140N893: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli	30% id, 81% cov
Q8RG11: D-lactate dehydrogenase (EC 1.1.1.28) from Fusobacterium nucleatum	28% id, 80% cov
E0NDE9: D-lactate dehydrogenase (EC 1.1.1.28) from Pediococcus acidilactici	27% id, 82% cov
A0A0R1RJ30: D-lactate dehydrogenase (EC 1.1.1.28) from Furfurilactobacillus rossiae	28% id, 76% cov
LDHD_PEDAC / Q59642: D-lactate/D-glycerate dehydrogenase; D-LDH/GDH; D-specific 2-hydroxyacid dehydrogenase; EC 1.1.1.28; EC 1.1.1.29 from Pediococcus acidilactici ldhD / GI\|897794: D-lactate dehydrogenase; EC 1.1.1.28; EC 1.1.1.81 from Pediococcus acidilactici	26% id, 82% cov
O66939: D-lactate dehydrogenase (EC 1.1.1.28) from Aquifex aeolicus	33% id, 62% cov
A0A0M3KL04: D-lactate dehydrogenase (EC 1.1.1.28) from Sporolactobacillus inulinus	26% id, 71% cov
Q1GAA2: D-lactate dehydrogenase (EC 1.1.1.28); D-2-hydroxyacid dehydrogenase (NAD+) (EC 1.1.1.345) from Lactobacillus delbrueckii	24% id, 74% cov
ldhD / Q88VJ2: D-lactate dehydrogenase subunit (EC 1.1.1.28) from Lactiplantibacillus plantarum C0LJH4: D-lactate dehydrogenase (EC 1.1.1.28) from Lactiplantibacillus plantarum	30% id, 58% cov
CH_091795: D-lactate dehydrogenase; EC 1.1.1.28 from Lactobacillus pentosus	30% id, 58% cov
More...

CCNA_03322: D-3-phosphoglycerate dehydrogenase is similar to:	PaperBLAST
A0A0M3KL04: D-lactate dehydrogenase (EC 1.1.1.28) from Sporolactobacillus inulinus	32% id, 97% cov
A0A0R1RJ30: D-lactate dehydrogenase (EC 1.1.1.28) from Furfurilactobacillus rossiae	31% id, 96% cov
Q8RG11: D-lactate dehydrogenase (EC 1.1.1.28) from Fusobacterium nucleatum	31% id, 91% cov
Q8EI78: D-lactate dehydrogenase (EC 1.1.1.28) from Shewanella oneidensis	30% id, 92% cov
F8A9V0: D-lactate dehydrogenase (EC 1.1.1.28) from Thermodesulfatator indicus	35% id, 80% cov
ldhD / Q88VJ2: D-lactate dehydrogenase subunit (EC 1.1.1.28) from Lactiplantibacillus plantarum C0LJH4: D-lactate dehydrogenase (EC 1.1.1.28) from Lactiplantibacillus plantarum	32% id, 87% cov
CH_091801: D-lactate dehydrogenase; EC 1.1.1.28 from Leuconostoc mesenteroides D-ldh / P51011: D-lactate dehydrogenase subunit (EC 1.1.1.28) from Leuconostoc mesenteroides	28% id, 98% cov
CH_091795: D-lactate dehydrogenase; EC 1.1.1.28 from Lactobacillus pentosus	31% id, 87% cov
E0NDE9: D-lactate dehydrogenase (EC 1.1.1.28) from Pediococcus acidilactici	33% id, 82% cov
F8RPR8: D-lactate dehydrogenase (EC 1.1.1.28) from Weizmannia coagulans	32% id, 84% cov
LDHD_PEDAC / Q59642: D-lactate/D-glycerate dehydrogenase; D-LDH/GDH; D-specific 2-hydroxyacid dehydrogenase; EC 1.1.1.28; EC 1.1.1.29 from Pediococcus acidilactici ldhD / GI\|897794: D-lactate dehydrogenase; EC 1.1.1.28; EC 1.1.1.81 from Pediococcus acidilactici	32% id, 82% cov
O66939: D-lactate dehydrogenase (EC 1.1.1.28) from Aquifex aeolicus	30% id, 84% cov
Q9I530: D-lactate dehydrogenase (EC 1.1.1.28) from Pseudomonas aeruginosa	33% id, 77% cov
Q1GAA2: D-lactate dehydrogenase (EC 1.1.1.28); D-2-hydroxyacid dehydrogenase (NAD+) (EC 1.1.1.345) from Lactobacillus delbrueckii	26% id, 94% cov
GB\|CAA47255.1: D-lactate dehydrogenase; EC 1.1.1.28 from Lactobacillus helveticus P30901: D-lactate dehydrogenase (EC 1.1.1.28) from Lactobacillus helveticus	31% id, 79% cov
vanH / Q7B609: D-lactate dehydrogenase (EC 1.1.1.28) from Enterococcus faecium	28% id, 82% cov
HtpH / b1380: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli ldhA: D-lactate dehydrogenase; EC 1.1.1.28 from Escherichia coli ldhA / P52643: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli	37% id, 62% cov
A0A140N893: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli	37% id, 62% cov
More...

CCNA_03838: gluconate 2-dehydrogenase/glyoxylate reductase/hydroxypyruvate reductase is similar to:	PaperBLAST
2KGR_VITVI / A5CAL1: Glyoxylate/hydroxypyruvate/pyruvate reductase 2KGR; 2-keto-L-gulonate reductase; Vv2KGR; EC 1.1.1.26; EC 1.1.1.28; EC 1.1.1.79; EC 1.1.1.- from Vitis vinifera	40% id, 75% cov
Q9I530: D-lactate dehydrogenase (EC 1.1.1.28) from Pseudomonas aeruginosa	33% id, 92% cov
F8A9V0: D-lactate dehydrogenase (EC 1.1.1.28) from Thermodesulfatator indicus	34% id, 88% cov
O66939: D-lactate dehydrogenase (EC 1.1.1.28) from Aquifex aeolicus	32% id, 85% cov
Q1GAA2: D-lactate dehydrogenase (EC 1.1.1.28); D-2-hydroxyacid dehydrogenase (NAD+) (EC 1.1.1.345) from Lactobacillus delbrueckii	29% id, 95% cov
HtpH / b1380: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli ldhA: D-lactate dehydrogenase; EC 1.1.1.28 from Escherichia coli ldhA / P52643: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli	27% id, 100% cov
A0A140N893: D-lactate dehydrogenase (EC 1.1.1.28) from Escherichia coli	27% id, 100% cov
Q8RG11: D-lactate dehydrogenase (EC 1.1.1.28) from Fusobacterium nucleatum	29% id, 89% cov
GB\|CAA47255.1: D-lactate dehydrogenase; EC 1.1.1.28 from Lactobacillus helveticus P30901: D-lactate dehydrogenase (EC 1.1.1.28) from Lactobacillus helveticus	27% id, 97% cov
F8RPR8: D-lactate dehydrogenase (EC 1.1.1.28) from Weizmannia coagulans	26% id, 97% cov
ldhD / Q88VJ2: D-lactate dehydrogenase subunit (EC 1.1.1.28) from Lactiplantibacillus plantarum C0LJH4: D-lactate dehydrogenase (EC 1.1.1.28) from Lactiplantibacillus plantarum	30% id, 86% cov
CH_091795: D-lactate dehydrogenase; EC 1.1.1.28 from Lactobacillus pentosus	29% id, 86% cov
Q8EI78: D-lactate dehydrogenase (EC 1.1.1.28) from Shewanella oneidensis	27% id, 91% cov
A0A0M3KL04: D-lactate dehydrogenase (EC 1.1.1.28) from Sporolactobacillus inulinus	31% id, 79% cov
A0A0R1RJ30: D-lactate dehydrogenase (EC 1.1.1.28) from Furfurilactobacillus rossiae	27% id, 89% cov
LDHD_LACDA / P26297: D-lactate dehydrogenase; D-LDH; D-specific 2-hydroxyacid dehydrogenase; EC 1.1.1.28 from Lactobacillus delbrueckii ldhA / OMNI\|NTL01LD0096: D-lactate dehydrogenase; EC 1.1.1.28 from Lactobacillus delbrueckii	27% id, 89% cov
CH_091801: D-lactate dehydrogenase; EC 1.1.1.28 from Leuconostoc mesenteroides D-ldh / P51011: D-lactate dehydrogenase subunit (EC 1.1.1.28) from Leuconostoc mesenteroides	28% id, 82% cov
O83080: D-lactate dehydrogenase (EC 1.1.1.28) from Treponema pallidum	35% id, 61% cov
E0NDE9: D-lactate dehydrogenase (EC 1.1.1.28) from Pediococcus acidilactici	30% id, 68% cov
LDHD_PEDAC / Q59642: D-lactate/D-glycerate dehydrogenase; D-LDH/GDH; D-specific 2-hydroxyacid dehydrogenase; EC 1.1.1.28; EC 1.1.1.29 from Pediococcus acidilactici ldhD / GI\|897794: D-lactate dehydrogenase; EC 1.1.1.28; EC 1.1.1.81 from Pediococcus acidilactici	29% id, 68% cov
More...

CCNA_03500: FAD/FMN-containing dehydrogenase is similar to:	PaperBLAST
A0A0G2K1W9: D-lactate dehydrogenase (EC 1.1.1.28) from Rattus norvegicus	28% id, 94% cov
G4MWZ3: D-lactate dehydrogenase (EC 1.1.1.28) from Pyricularia oryzae	30% id, 75% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory