Curated BLAST for Genomes

 

Curated BLAST

Searching in Caulobacter crescentus NA1000 (Caulo)

Found 13 curated entries in PaperBLAST's database that match '1.1.1.283'.

These curated entries have 10 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Caulobacter crescentus NA1000, or try another query

CCNA_03541: 2,5-diketo-D-gluconic acid reductase
is similar to:
PaperBLAST

GR_BACSU / O32210: Glyoxal reductase; GR; Methylglyoxal reductase; EC 1.1.1.-; EC 1.1.1.283 from Bacillus subtilis
yvgN / O32210: glyoxal/methylglyoxal reductase (EC 1.1.1.283; EC 1.1.1.91) from Bacillus subtilis

43% id,
92% cov

Q6IMN8: methylglyoxal reductase (NADPH) (EC 1.1.1.283) from Dictyostelium discoideum

35% id,
88% cov

C4R5F8: methylglyoxal reductase (NADPH) (EC 1.1.1.283) from Komagataella phaffii

28% id,
94% cov

More...

CCNA_03777: Tas protein
is similar to:
PaperBLAST

Q6IMN8: methylglyoxal reductase (NADPH) (EC 1.1.1.283) from Dictyostelium discoideum

23% id,
89% cov

GR_BACSU / O32210: Glyoxal reductase; GR; Methylglyoxal reductase; EC 1.1.1.-; EC 1.1.1.283 from Bacillus subtilis
yvgN / O32210: glyoxal/methylglyoxal reductase (EC 1.1.1.283; EC 1.1.1.91) from Bacillus subtilis

29% id,
60% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

3697371-3698918 (frame +3) on NC_011916
is similar to:
PaperBLAST

GR_BACSU / O32210: Glyoxal reductase; GR; Methylglyoxal reductase; EC 1.1.1.-; EC 1.1.1.283 from Bacillus subtilis
yvgN / O32210: glyoxal/methylglyoxal reductase (EC 1.1.1.283; EC 1.1.1.91) from Bacillus subtilis
Also see hits to annotated proteins above

42% id,
97% cov

Q6IMN8: methylglyoxal reductase (NADPH) (EC 1.1.1.283) from Dictyostelium discoideum
Also see hits to annotated proteins above

34% id,
91% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory