Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Caulobacter crescentus NA1000 (Caulo)

Found 37 curated entries in PaperBLAST's database that match '1.1.1.41' as complete word(s).

These curated entries have 29 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Caulobacter crescentus NA1000, or try another query

CCNA_02607: isocitrate dehydrogenase is similar to:	PaperBLAST
A4SBK5: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Ostreococcus sp.	34% id, 99% cov
C1E5X2: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Micromonas commoda	33% id, 98% cov
IDH_OSTTA / A0A096P8D3: Isocitrate dehydrogenase (NAD(+)), mitochondrial; OtIDH; EC 1.1.1.41 from Ostreococcus tauri	33% id, 86% cov
IDH1_PHATC / B7G620: Isocitrate dehydrogenase [NAD(+)] 1, mitochondrial; PtIDH1; EC 1.1.1.41 from Phaeodactylum tricornutum	33% id, 75% cov
A4ADB8: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Congregibacter litoralis	34% id, 46% cov
More...

CCNA_00193: 3-isopropylmalate dehydrogenase is similar to:	PaperBLAST
IDH5_ARATH / Q945K7: Isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial; IDH-V; Isocitric dehydrogenase 5; NAD(+)-specific ICDH 5; EC 1.1.1.41 from Arabidopsis thaliana Q945K7: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Arabidopsis thaliana	37% id, 87% cov
IDH6_ARATH / Q8LG77: Isocitrate dehydrogenase [NAD] catalytic subunit 6, mitochondrial; IDH-VI; Isocitric dehydrogenase 6; NAD(+)-specific ICDH 6; EC 1.1.1.41 from Arabidopsis thaliana Q8LG77: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Arabidopsis thaliana	36% id, 86% cov
IDH3A_CAEEL / Q93714: Probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial; Isocitric dehydrogenase subunit alpha; NAD(+)-specific ICDH subunit alpha; EC 1.1.1.41 from Caenorhabditis elegans	34% id, 92% cov
IDH2_YEAST / P28241: Isocitrate dehydrogenase [NAD] subunit 2, mitochondrial; Isocitric dehydrogenase; NAD(+)-specific ICDH; EC 1.1.1.41 from Saccharomyces cerevisiae P28241: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Saccharomyces cerevisiae	34% id, 90% cov
IDH3A_HUMAN / P50213: Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial; Isocitric dehydrogenase subunit alpha; NAD(+)-specific ICDH subunit alpha; EC 1.1.1.41 from Homo sapiens P50213: isocitrate dehydrogenase (NAD+) (subunit 2/2) (EC 1.1.1.41) from Homo sapiens	34% id, 90% cov
IDH3A_PIG / P56471: Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial; Isocitric dehydrogenase subunit alpha; NAD(+)-specific ICDH subunit alpha; EC 1.1.1.41 from Sus scrofa	34% id, 90% cov
IDH3A_MOUSE / Q9D6R2: Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial; Isocitric dehydrogenase subunit alpha; NAD(+)-specific ICDH subunit alpha; EC 1.1.1.41 from Mus musculus Q9D6R2: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Mus musculus	34% id, 90% cov
IDH3A_RAT / Q99NA5: Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial; Isocitric dehydrogenase subunit alpha; NAD(+)-specific ICDH subunit alpha; EC 1.1.1.41 from Rattus norvegicus Q99NA5: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Rattus norvegicus	35% id, 87% cov
IDH3A_BOVIN / P41563: Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial; Isocitrate dehydrogenase subunits 3/4; Isocitric dehydrogenase subunit alpha; NAD(+)-specific ICDH subunit alpha; EC 1.1.1.41 from Bos taurus	35% id, 87% cov
Q8LFC0: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Arabidopsis thaliana	34% id, 89% cov
G1APK3: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Rhodotorula toruloides	34% id, 89% cov
idh2 / RF\|NP_595203.1: isocitrate dehydrogenase (NAD+) subunit 2; EC 1.1.1.41 from Schizosaccharomyces pombe	33% id, 88% cov
IDH2_SCHPO / Q9USP8: Isocitrate dehydrogenase [NAD] subunit 2, mitochondrial; Isocitric dehydrogenase; NAD(+)-specific ICDH; EC 1.1.1.41 from Schizosaccharomyces pombe	33% id, 87% cov
O81796: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Arabidopsis thaliana	32% id, 89% cov
P93032: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Arabidopsis thaliana	32% id, 89% cov
IDH1_YEAST / P28834: Isocitrate dehydrogenase [NAD] subunit 1, mitochondrial; Isocitric dehydrogenase; NAD(+)-specific ICDH; EC 1.1.1.41 from Saccharomyces cerevisiae P28834: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Saccharomyces cerevisiae	32% id, 91% cov
Q8U488: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Pyrococcus furiosus	32% id, 87% cov
G1APK2: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Rhodotorula toruloides	30% id, 89% cov
IDH1_SCHPO / O13696: Isocitrate dehydrogenase [NAD] subunit 1, mitochondrial; Isocitric dehydrogenase; NAD(+)-specific ICDH; EC 1.1.1.41 from Schizosaccharomyces pombe idh1 / RF\|NP_594397.1: isocitrate dehydrogenase (NAD+) subunit 1 Idh1; EC 1.1.1.41 from Schizosaccharomyces pombe	29% id, 93% cov
O43837: isocitrate dehydrogenase (NAD+) (subunit 1/2) (EC 1.1.1.41) from Homo sapiens	30% id, 86% cov
P51553: isocitrate dehydrogenase (NAD+) (subunit 1/3) (EC 1.1.1.41) from Homo sapiens	31% id, 81% cov
Q8GAX0: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Acidithiobacillus thiooxidans	29% id, 74% cov
More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

206995-208197 (frame -1) on NC_011916 is similar to:	PaperBLAST
IDH5_ARATH / Q945K7: Isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial; IDH-V; Isocitric dehydrogenase 5; NAD(+)-specific ICDH 5; EC 1.1.1.41 from Arabidopsis thaliana Q945K7: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Arabidopsis thaliana Also see hits to annotated proteins above	36% id, 92% cov
IDH3A_CAEEL / Q93714: Probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial; Isocitric dehydrogenase subunit alpha; NAD(+)-specific ICDH subunit alpha; EC 1.1.1.41 from Caenorhabditis elegans Also see hits to annotated proteins above	33% id, 99% cov
G1APK3: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Rhodotorula toruloides Also see hits to annotated proteins above	33% id, 97% cov
O81796: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Arabidopsis thaliana Also see hits to annotated proteins above	32% id, 96% cov
idh2 / RF\|NP_595203.1: isocitrate dehydrogenase (NAD+) subunit 2; EC 1.1.1.41 from Schizosaccharomyces pombe Also see hits to annotated proteins above	32% id, 94% cov
IDH2_SCHPO / Q9USP8: Isocitrate dehydrogenase [NAD] subunit 2, mitochondrial; Isocitric dehydrogenase; NAD(+)-specific ICDH; EC 1.1.1.41 from Schizosaccharomyces pombe Also see hits to annotated proteins above	32% id, 93% cov
P93032: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Arabidopsis thaliana Also see hits to annotated proteins above	32% id, 90% cov
IDH1_SCHPO / O13696: Isocitrate dehydrogenase [NAD] subunit 1, mitochondrial; Isocitric dehydrogenase; NAD(+)-specific ICDH; EC 1.1.1.41 from Schizosaccharomyces pombe idh1 / RF\|NP_594397.1: isocitrate dehydrogenase (NAD+) subunit 1 Idh1; EC 1.1.1.41 from Schizosaccharomyces pombe Also see hits to annotated proteins above	29% id, 99% cov
P51553: isocitrate dehydrogenase (NAD+) (subunit 1/3) (EC 1.1.1.41) from Homo sapiens Also see hits to annotated proteins above	31% id, 91% cov
G1APK2: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Rhodotorula toruloides Also see hits to annotated proteins above	30% id, 92% cov
Q8GAX0: isocitrate dehydrogenase (NAD+) (EC 1.1.1.41) from Acidithiobacillus thiooxidans Also see hits to annotated proteins above	27% id, 91% cov
More...

2753841-2755127 (frame +3) on NC_011916 is similar to:	PaperBLAST
IDH1_PHATC / B7G620: Isocitrate dehydrogenase [NAD(+)] 1, mitochondrial; PtIDH1; EC 1.1.1.41 from Phaeodactylum tricornutum Also see hits to annotated proteins above	33% id, 77% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory