Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Caulobacter crescentus NA1000 (Caulo)

Found 72 curated entries in PaperBLAST's database that match '1.1.1.42' as complete word(s).

These curated entries have 51 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Caulobacter crescentus NA1000, or try another query

CCNA_02607: isocitrate dehydrogenase is similar to:	PaperBLAST
icd1 / P9WKL1: isocitrate dehydrogenase subunit (EC 1.1.1.42) from Mycobacterium tuberculosis P9WKL1: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Mycobacterium tuberculosis A5U813: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Mycobacterium tuberculosis	73% id, 99% cov
B7GQR3: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Bifidobacterium longum	72% id, 100% cov
ICDHC_ARATH / Q9SRZ6: Cytosolic isocitrate dehydrogenase [NADP]; EC 1.1.1.42 from Arabidopsis thaliana cICDH / Q9SRZ6: NADP+-dependent isocitrate dehydrogenase (EC 1.1.1.42) from Arabidopsis thaliana Q9SRZ6: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Arabidopsis thaliana	69% id, 99% cov
IDHC_SOYBN / Q06197: Isocitrate dehydrogenase [NADP]; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Glycine max	68% id, 99% cov
Q6R6M7: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Pisum sativum	68% id, 99% cov
IDHC_HUMAN / O75874: Isocitrate dehydrogenase [NADP] cytoplasmic; IDH; IDH1; Cytosolic NADP-isocitrate dehydrogenase; IDPc; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Homo sapiens IDH1 / O75874: cytosolic NADP(+)-dependent isocitrate dehydrogenase monomer (EC 1.1.1.42) from Homo sapiens O75874: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Homo sapiens	68% id, 99% cov
Q4E4L7: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Trypanosoma cruzi	67% id, 99% cov
IDHP_PIG / P33198: Isocitrate dehydrogenase [NADP], mitochondrial; IDH; ICD-M; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Sus scrofa	68% id, 97% cov
A0A4X1UZU9: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Sus scrofa	68% id, 97% cov
IDHC_RAT / P41562: Isocitrate dehydrogenase [NADP] cytoplasmic; IDH; IDH1; Cytosolic NADP-isocitrate dehydrogenase; IDPc; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Rattus norvegicus P41562: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Rattus norvegicus	68% id, 97% cov
A0AR16: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Pinus pinaster	68% id, 97% cov
Q6C2Y4: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Yarrowia lipolytica	67% id, 98% cov
ICDHX_ARATH / Q9SLK0: Peroxisomal isocitrate dehydrogenase [NADP]; EC 1.1.1.42 from Arabidopsis thaliana Q9SLK0: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Arabidopsis thaliana	68% id, 97% cov
IDHC_MOUSE / O88844: Isocitrate dehydrogenase [NADP] cytoplasmic; IDH; IDH1; Cytosolic NADP-isocitrate dehydrogenase; IDPc; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Mus musculus O88844: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Mus musculus	68% id, 97% cov
J9Q6L4: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Capsicum annuum	67% id, 98% cov
IDHC_BOVIN / Q9XSG3: Isocitrate dehydrogenase [NADP] cytoplasmic; IDH; IDH1; Cytosolic NADP-isocitrate dehydrogenase; IDPc; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Bos taurus	67% id, 97% cov
IDHC_YEAST / P41939: Isocitrate dehydrogenase [NADP] cytoplasmic; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Saccharomyces cerevisiae IDP2 / P41939: NADP-dependent isocitrate dehydrogenase (EC 1.1.1.42) from Saccharomyces cerevisiae P41939: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Saccharomyces cerevisiae	65% id, 98% cov
IDHP_MOUSE / P54071: Isocitrate dehydrogenase [NADP], mitochondrial; IDH; ICD-M; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Mus musculus P54071: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Mus musculus	69% id, 90% cov
IDHP_HUMAN / P48735: Isocitrate dehydrogenase [NADP], mitochondrial; IDH; ICD-M; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Homo sapiens IDH2 / P48735: mitochondrial isocitrate dehydrogenase monomer (EC 1.1.1.42) from Homo sapiens P48735: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Homo sapiens	69% id, 90% cov
IDHP_RAT / P56574: Isocitrate dehydrogenase [NADP], mitochondrial; IDH; ICD-M; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Rattus norvegicus P56574: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Rattus norvegicus	68% id, 90% cov
P21954: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Saccharomyces cerevisiae	64% id, 95% cov
Q4DG65: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Trypanosoma cruzi	62% id, 94% cov
A0A2G2Y555: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Capsicum annuum	67% id, 86% cov
IDHP_SCHPO / O14254: Probable isocitrate dehydrogenase [NADP], mitochondrial; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Schizosaccharomyces pombe	61% id, 92% cov
ICDHP_ARATH / Q8LPJ5: Isocitrate dehydrogenase [NADP], chloroplastic/mitochondrial; EC 1.1.1.42 from Arabidopsis thaliana	66% id, 83% cov
O65853: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Nicotiana tabacum	64% id, 84% cov
idpA: mitochondrial NADP-dependent isocitrate dehydrogenase; EC 1.1.1.42 from Emericella nidulans	66% id, 82% cov
Q6AQ66: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Desulfotalea psychrophila	50% id, 99% cov
More...

CCNA_00193: 3-isopropylmalate dehydrogenase is similar to:	PaperBLAST
icd / Q5UXA4: isocitrate dehydrogenase, NADP (EC 1.1.1.42) from Haloarcula marismortui	29% id, 90% cov
P96318: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Caldococcus noboribetus	28% id, 88% cov
icd / RF\|YP_144801.1: isocitrate dehydrogenase (NADP(+)); EC 1.1.1.42 from Thermus thermophilus P33197: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Thermus thermophilus	36% id, 67% cov
Q9HLV8: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Thermoplasma acidophilum	25% id, 94% cov
Q9YE81: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Aeropyrum pernix	27% id, 86% cov
Q1GZD1: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Methylobacillus flagellatus	31% id, 60% cov
IDH_HALVD / D4GU92: Isocitrate dehydrogenase [NADP]; IDH; ICDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Haloferax volcanii	36% id, 36% cov
More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

206995-208197 (frame -1) on NC_011916 is similar to:	PaperBLAST
P96318: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Caldococcus noboribetus Also see hits to annotated proteins above	28% id, 94% cov
Q9HLV8: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Thermoplasma acidophilum Also see hits to annotated proteins above	25% id, 96% cov
A8YGS2: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Microcystis aeruginosa	31% id, 36% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory