Curated BLAST for Genomes

 

Curated BLAST

Searching in Caulobacter crescentus NA1000 (Caulo)

Found 28 curated entries in PaperBLAST's database that match '1.1.1.9' as complete word(s).

These curated entries have 24 distinct sequences.

Running ublast with E ≤ 0.01

Found 23 relevant proteins in Caulobacter crescentus NA1000, or try another query

CCNA_01892: short chain dehydrogenase
is similar to:
PaperBLAST

Q8GR61: D-xylulose reductase (EC 1.1.1.9) from Gluconobacter oxydans

33% id,
100% cov

CCNA_01345: short chain dehydrogenase
is similar to:
PaperBLAST

Q8GR61: D-xylulose reductase (EC 1.1.1.9) from Gluconobacter oxydans

33% id,
100% cov

CCNA_01885: short chain dehydrogenase
is similar to:
PaperBLAST

Q8GR61: D-xylulose reductase (EC 1.1.1.9) from Gluconobacter oxydans

31% id,
100% cov

CCNA_01559: 2-deoxy-D-gluconate 3-dehydrogenase
is similar to:
PaperBLAST

Q8GR61: D-xylulose reductase (EC 1.1.1.9) from Gluconobacter oxydans

31% id,
100% cov

CCNA_00092: short chain dehydrogenase
is similar to:
PaperBLAST

Q8GR61: D-xylulose reductase (EC 1.1.1.9) from Gluconobacter oxydans

31% id,
100% cov

CCNA_03491: gluconate 5-dehydrogenase (Ga5DH)-related protein
is similar to:
PaperBLAST

Q8GR61: D-xylulose reductase (EC 1.1.1.9) from Gluconobacter oxydans

31% id,
99% cov

CCNA_03124: NAD/mycothiol-dependent formaldehyde dehydrogenase
is similar to:
PaperBLAST

DHSO1_YEAST / P35497: Sorbitol dehydrogenase 1; SDH 1; Polyol dehydrogenase; Xylitol dehydrogenase; EC 1.1.1.-; EC 1.1.1.9 from Saccharomyces cerevisiae

30% id,
97% cov

DHSO_BACSU / Q06004: Sorbitol dehydrogenase; SDH; Glucitol dehydrogenase; L-iditol 2-dehydrogenase; Polyol dehydrogenase; Xylitol dehydrogenase; EC 1.1.1.-; EC 1.1.1.14; EC 1.1.1.9 from Bacillus subtilis
gutB / Q06004: glucitol dehydrogenase monomer (EC 1.1.1.9; EC 1.1.1.14) from Bacillus subtilis

31% id,
93% cov

DHSO_HUMAN / Q00796: Sorbitol dehydrogenase; SDH; (R,R)-butanediol dehydrogenase; L-iditol 2-dehydrogenase; Polyol dehydrogenase; Ribitol dehydrogenase; RDH; Xylitol dehydrogenase; XDH; EC 1.1.1.-; EC 1.1.1.4; EC 1.1.1.14; EC 1.1.1.56; EC 1.1.1.9 from Homo sapiens

30% id,
90% cov

More...

CCNA_02929: sorbitol dehydrogenase
is similar to:
PaperBLAST

BPHYT_RS16050: xylitol 2-dehydrogenase (EC 1.1.1.9) from Burkholderia phytofirmans

30% id,
96% cov

XYL2_ASPOR / Q86ZV0: D-xylulose reductase A; Xylitol dehydrogenase A; EC 1.1.1.9 from Aspergillus oryzae
GI|83774265: xylitol dehydrogenase; EC 1.1.1.9 from Aspergillus oryzae
xdhA / Q86ZV0: NAD+-dependent xylitol dehydrogenase (EC 1.1.1.9) from Aspergillus oryzae
Q86ZV0: D-xylulose reductase (EC 1.1.1.9) from Aspergillus oryzae

30% id,
95% cov

A0A1B4XTS0: L-arabinitol 4-dehydrogenase (EC 1.1.1.12); D-xylulose reductase (EC 1.1.1.9) from Meyerozyma caribbica

29% id,
98% cov

More...

CCNA_00123: 3-hydroxyacyl CoA dehydrogenase
is similar to:
PaperBLAST

Q8GR61: D-xylulose reductase (EC 1.1.1.9) from Gluconobacter oxydans

28% id,
99% cov

CCNA_02178: short-chain alcohol dehydrogenase
is similar to:
PaperBLAST

Q8GR61: D-xylulose reductase (EC 1.1.1.9) from Gluconobacter oxydans

34% id,
82% cov

CCNA_03172: 3-oxoacyl-(acyl-carrier protein) reductase
is similar to:
PaperBLAST

Q8GR61: D-xylulose reductase (EC 1.1.1.9) from Gluconobacter oxydans

28% id,
98% cov

CCNA_02601: glutathione-dependent formaldehyde dehydrogenase
is similar to:
PaperBLAST

A0A1B4XTS0: L-arabinitol 4-dehydrogenase (EC 1.1.1.12); D-xylulose reductase (EC 1.1.1.9) from Meyerozyma caribbica

28% id,
96% cov

xdh1 / Q876R2: D-sorbitol dehydrogenase (EC 1.1.1.14; EC 1.1.1.9) from Hypocrea jecorina

28% id,
95% cov

S6BFC0: D-xylulose reductase (EC 1.1.1.9) from Rhizomucor pusillus

27% id,
96% cov

More...

CCNA_03875: quinone oxidoreductase
is similar to:
PaperBLAST

Dshi_0551: D-xylulose reductase (EC 1.1.1.9) from Dinoroseobacter shibae

29% id,
96% cov

HSERO_RS17015: sorbitol dehydrogenase (EC 1.1.1.14); xylitol dehydrogenase (EC 1.1.1.9) from Herbaspirillum seropedicae

26% id,
93% cov

Q2K0Q7: D-xylulose reductase (EC 1.1.1.9) from Rhizobium etli

25% id,
93% cov

More...

CCNA_01640: quinone oxidoreductase
is similar to:
PaperBLAST

Dshi_0551: D-xylulose reductase (EC 1.1.1.9) from Dinoroseobacter shibae

27% id,
96% cov

HSERO_RS17015: sorbitol dehydrogenase (EC 1.1.1.14); xylitol dehydrogenase (EC 1.1.1.9) from Herbaspirillum seropedicae

29% id,
87% cov

Q59545: xylitol dehydrogenase (EC 1.1.1.9) from Morganella morganii

26% id,
81% cov

More...

CCNA_02479: aryl-alcohol dehydrogenase
is similar to:
PaperBLAST

PS417_17720: xylitol 2-dehydrogenase (EC 1.1.1.9) from Pseudomonas simiae

27% id,
99% cov

xdh1 / Q876R2: D-sorbitol dehydrogenase (EC 1.1.1.14; EC 1.1.1.9) from Hypocrea jecorina

27% id,
88% cov

BPHYT_RS16050: xylitol 2-dehydrogenase (EC 1.1.1.9) from Burkholderia phytofirmans

28% id,
83% cov

More...

CCNA_03279: short chain dehydrogenase
is similar to:
PaperBLAST

Q8GR61: D-xylulose reductase (EC 1.1.1.9) from Gluconobacter oxydans

35% id,
73% cov

CCNA_00405: short chain dehydrogenase
is similar to:
PaperBLAST

Q8GR61: D-xylulose reductase (EC 1.1.1.9) from Gluconobacter oxydans

26% id,
98% cov

CCNA_01642: gluconate 5-dehydrogenase
is similar to:
PaperBLAST

Q8GR61: D-xylulose reductase (EC 1.1.1.9) from Gluconobacter oxydans

23% id,
99% cov

CCNA_01880: 3-ketoacyl-(acyl-carrier-protein) reductase FabG
is similar to:
PaperBLAST

Q8GR61: D-xylulose reductase (EC 1.1.1.9) from Gluconobacter oxydans

32% id,
70% cov

CCNA_00095: quinone oxidoreductase
is similar to:
PaperBLAST

S6BFC0: D-xylulose reductase (EC 1.1.1.9) from Rhizomucor pusillus

23% id,
96% cov

Q59545: xylitol dehydrogenase (EC 1.1.1.9) from Morganella morganii

27% id,
56% cov

CCNA_03181: alcohol dehydrogenase
is similar to:
PaperBLAST

Q59545: xylitol dehydrogenase (EC 1.1.1.9) from Morganella morganii

22% id,
74% cov

CCNA_00809: quinone oxidoreductase
is similar to:
PaperBLAST

HSERO_RS17015: sorbitol dehydrogenase (EC 1.1.1.14); xylitol dehydrogenase (EC 1.1.1.9) from Herbaspirillum seropedicae

26% id,
57% cov

CCNA_02438: quinone oxidoreductase
is similar to:
PaperBLAST

xdh1 / Q876R2: D-sorbitol dehydrogenase (EC 1.1.1.14; EC 1.1.1.9) from Hypocrea jecorina

34% id,
30% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 21 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

3269577-3270992 (frame +3) on NC_011916
is similar to:
PaperBLAST

DHSO1_YEAST / P35497: Sorbitol dehydrogenase 1; SDH 1; Polyol dehydrogenase; Xylitol dehydrogenase; EC 1.1.1.-; EC 1.1.1.9 from Saccharomyces cerevisiae
Also see hits to annotated proteins above

30% id,
98% cov

DHSO_BACSU / Q06004: Sorbitol dehydrogenase; SDH; Glucitol dehydrogenase; L-iditol 2-dehydrogenase; Polyol dehydrogenase; Xylitol dehydrogenase; EC 1.1.1.-; EC 1.1.1.14; EC 1.1.1.9 from Bacillus subtilis
gutB / Q06004: glucitol dehydrogenase monomer (EC 1.1.1.9; EC 1.1.1.14) from Bacillus subtilis
Also see hits to annotated proteins above

31% id,
94% cov

DHSO_ARATH / Q9FJ95: Sorbitol dehydrogenase; SDH; Polyol dehydrogenase; Ribitol dehydrogenase; RDH; Xylitol dehydrogenase; XDH; EC 1.1.1.-; EC 1.1.1.56; EC 1.1.1.9 from Arabidopsis thaliana
Also see hits to annotated proteins above

29% id,
96% cov

More...

3088839-3090674 (frame +3) on NC_011916
is similar to:
PaperBLAST

xdh1 / Q876R2: D-sorbitol dehydrogenase (EC 1.1.1.14; EC 1.1.1.9) from Hypocrea jecorina
Also see hits to annotated proteins above

29% id,
98% cov

DHSO_SHEEP / P07846: Sorbitol dehydrogenase; SDH; L-iditol 2-dehydrogenase; Polyol dehydrogenase; Xylitol dehydrogenase; XDH; EC 1.1.1.-; EC 1.1.1.14; EC 1.1.1.9 from Ovis aries
Also see hits to annotated proteins above

27% id,
97% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory