Curated BLAST for Genomes

 

Curated BLAST

Searching in Caulobacter crescentus NA1000 (Caulo)

Found 24 curated entries in PaperBLAST's database that match '1.1.3.2'.

These curated entries have 18 distinct sequences.

Running ublast with E ≤ 0.01

Found 9 relevant proteins in Caulobacter crescentus NA1000, or try another query

CCNA_01462: lactate 2-monooxygenase
is similar to:
PaperBLAST

Q8Z0C8: L-lactate oxidase (EC 1.1.3.2) from Nostoc sp.

39% id,
96% cov

F8WQN2: L-lactate oxidase (EC 1.1.3.2) from Chlamydomonas reinhardtii

35% id,
95% cov

A9QH69: (S)-2-hydroxy-acid oxidase (EC 1.1.3.15); L-lactate oxidase (EC 1.1.3.2) from Streptococcus iniae

31% id,
89% cov

More...

CCNA_01209: L-lactate dehydrogenase
is similar to:
PaperBLAST

Q8Z0C8: L-lactate oxidase (EC 1.1.3.2) from Nostoc sp.

38% id,
96% cov

F8WQN2: L-lactate oxidase (EC 1.1.3.2) from Chlamydomonas reinhardtii

37% id,
94% cov

lctO / D4YFM2: lactate oxidase monomer (EC 1.1.3.2) from Aerococcus viridans
D4YFM2: L-lactate oxidase (EC 1.1.3.2) from Aerococcus viridans

31% id,
47% cov

More...

CCNA_03278: aminobutyraldehyde dehydrogenase
is similar to:
PaperBLAST

GLPO_MYCPN / P75063: Glycerol 3-phosphate oxidase; GlpO; L-alpha-glycerophosphate oxidase; EC 1.1.3.21 from Mycoplasma pneumoniae

25% id,
92% cov

CCNA_01337: GMC family oxidoreductase
is similar to:
PaperBLAST

Q6CEP8: long-chain-alcohol oxidase (EC 1.1.3.20) from Yarrowia lipolytica

33% id,
32% cov

Q6CEP8: long-chain-alcohol oxidase (EC 1.1.3.20) from Yarrowia lipolytica

37% id,
23% cov

CCNA_02725: choline dehydrogenase
is similar to:
PaperBLAST

Q6CEP8: long-chain-alcohol oxidase (EC 1.1.3.20) from Yarrowia lipolytica

35% id,
30% cov

A0A024FB95: alcohol oxidase (EC 1.1.3.13); long-chain-alcohol oxidase (EC 1.1.3.20) from Starmerella bombicola

27% id,
22% cov

fao1 / Q9P8D8: long-chain fatty alcohol oxidase (EC 1.1.3.20) from [Candida] cloacae

24% id,
22% cov

CCNA_00994: oxidoreductase, GMC family
is similar to:
PaperBLAST

Q6CEP8: long-chain-alcohol oxidase (EC 1.1.3.20) from Yarrowia lipolytica

38% id,
27% cov

CCNA_03013: alkyl hydroperoxide reductase subunit F
is similar to:
PaperBLAST

GLPO_ENTCA / O86963: Alpha-glycerophosphate oxidase; Glycerol-3-phosphate oxidase; EC 1.1.3.21 from Enterococcus casseliflavus
glpO / O86963: glycerol-3-phosphate oxidase (EC 1.1.3.21) from Enterococcus casseliflavus

22% id,
36% cov

CCNA_01710: BetA-family choline dehydrogenase
is similar to:
PaperBLAST

glpO: glycerol-3-phosphate oxidase; EC 1.1.3.21 from Mycoplasma mycoides
Q70GP9: glycerol-3-phosphate oxidase (EC 1.1.3.21) from Mycoplasma mycoides

43% id,
12% cov

FAO1_LOTJA / B5WWZ8: Long-chain-alcohol oxidase FAO1; Long-chain fatty alcohol oxidase 1; EC 1.1.3.20 from Lotus japonicus

30% id,
14% cov

FAO3_ARATH / Q9LW56: Long-chain-alcohol oxidase FAO3; Long-chain fatty alcohol oxidase 3; EC 1.1.3.20 from Arabidopsis thaliana
AtFAO3 / Q9LW56: long-chain-alcohol oxidase (EC 1.1.3.20) from Arabidopsis thaliana

24% id,
13% cov

CCNA_01706: BetA-family choline dehydrogenase
is similar to:
PaperBLAST

fao1 / Q9P8D8: long-chain fatty alcohol oxidase (EC 1.1.3.20) from [Candida] cloacae

37% id,
10% cov

A0A024FB95: alcohol oxidase (EC 1.1.3.13); long-chain-alcohol oxidase (EC 1.1.3.20) from Starmerella bombicola

37% id,
9% cov

FAO1_LOTJA / B5WWZ8: Long-chain-alcohol oxidase FAO1; Long-chain fatty alcohol oxidase 1; EC 1.1.3.20 from Lotus japonicus

25% id,
13% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory