Searching in Caulobacter crescentus NA1000 (Caulo)
Found 22 curated entries in PaperBLAST's database that match '1.13.11.1' as complete word(s).
These curated entries have 18 distinct sequences.
Running ublast with E ≤ 0.01
Found 2 relevant proteins in Caulobacter crescentus NA1000, or try another query
| CCNA_02491: protocatechuate 3,4-dioxygenase beta chain is similar to: | PaperBLAST |
CATA_ACIAD / P07773: Catechol 1,2-dioxygenase; 1,2-CTD; EC 1.13.11.1 from Acinetobacter baylyi | 31% id, 63% cov |
Q8G9L3: catechol 1,2-dioxygenase (EC 1.13.11.1) from Rhodococcus opacus | 31% id, 60% cov |
PS417_23660: Catechol 1,2-dioxygenase (EC 1.13.11.1) from Pseudomonas simiae | 31% id, 51% cov |
| CCNA_02492: protocatechuate 3,4-dioxygenase alpha chain is similar to: | PaperBLAST |
PS417_23660: Catechol 1,2-dioxygenase (EC 1.13.11.1) from Pseudomonas simiae | 27% id, 66% cov |
Q8G9L3: catechol 1,2-dioxygenase (EC 1.13.11.1) from Rhodococcus opacus | 27% id, 54% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 2 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
| 2638962-2639675 (frame +3) on NC_011916 is similar to: | PaperBLAST |
Q8GAZ6: catechol 1,2-dioxygenase (EC 1.13.11.1) from Burkholderia sp. | 30% id, 68% cov |
salD / Q0VH42: 4-methylcatechol 1,2-dioxygenase (EC 1.13.11.1) from Pseudomonas reinekei | 28% id, 68% cov |
catA2: catechol 1,2-dioxygenase 2; EC 1.13.11.1 from Acinetobacter lwoffii | 32% id, 56% cov |
| 2639512-2640318 (frame +1) on NC_011916 is similar to: | PaperBLAST |
Q8GAZ6: catechol 1,2-dioxygenase (EC 1.13.11.1) from Burkholderia sp. | 27% id, 66% cov |
catA2: catechol 1,2-dioxygenase 2; EC 1.13.11.1 from Acinetobacter lwoffii | 27% id, 64% cov |
salD / Q0VH42: 4-methylcatechol 1,2-dioxygenase (EC 1.13.11.1) from Pseudomonas reinekei | 29% id, 43% cov |
Lawrence Berkeley National Laboratory