Curated BLAST for Genomes

 

Curated BLAST

Searching in Caulobacter crescentus NA1000 (Caulo)

Found 163 curated entries in PaperBLAST's database that match '1.13.11.5'.

These curated entries have 126 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Caulobacter crescentus NA1000, or try another query

CCNA_02615: homogentisate 1,2-dioxygenase
is similar to:
PaperBLAST

Pf6N2E2_5290: Homogentisate 1,2-dioxygenase (EC 1.13.11.5) from Pseudomonas fluorescens

65% id,
96% cov

PfGW456L13_4962: Homogentisate 1,2-dioxygenase (EC 1.13.11.5) from Pseudomonas fluorescens

64% id,
96% cov

HGD_PSEPK / Q88E47: Homogentisate 1,2-dioxygenase; HGDO; Homogentisate oxygenase; Homogentisic acid oxidase; Homogentisicase; EC 1.13.11.5 from Pseudomonas putida
Q88E47: homogentisate 1,2-dioxygenase (EC 1.13.11.5) from Pseudomonas putida

63% id,
97% cov

More...

CCNA_02980: tryptophan 2,3-dioxygenase
is similar to:
PaperBLAST

Q8PDA8: tryptophan 2,3-dioxygenase (EC 1.13.11.11); indoleamine 2,3-dioxygenase (EC 1.13.11.52) from Xanthomonas campestris

43% id,
88% cov

P48775: tryptophan 2,3-dioxygenase (EC 1.13.11.11); indoleamine 2,3-dioxygenase (EC 1.13.11.52) from Homo sapiens

29% id,
59% cov

P20351: tryptophan 2,3-dioxygenase (EC 1.13.11.11); indoleamine 2,3-dioxygenase (EC 1.13.11.52) from Drosophila melanogaster

35% id,
45% cov

More...

CCNA_00815: lignostilbene-alpha,beta-dioxygenase
is similar to:
PaperBLAST

Q8YXV3: 9-cis-epoxycarotenoid dioxygenase (EC 1.13.11.51) from Nostoc sp.

38% id,
95% cov

NCED4_ORYSJ / Q69NX5: 9-cis-epoxycarotenoid dioxygenase NCED4, chloroplastic; OsNCED4; EC 1.13.11.51 from Oryza sativa

32% id,
83% cov

NCED3_ORYSJ / Q5MBR5: 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic; OsNCED3; EC 1.13.11.51 from Oryza sativa

33% id,
79% cov

More...

CCNA_00336: lignostilbene-alpha,beta-dioxygenase
is similar to:
PaperBLAST

Q8YXV3: 9-cis-epoxycarotenoid dioxygenase (EC 1.13.11.51) from Nostoc sp.

28% id,
97% cov

Q460X8: 9-cis-epoxycarotenoid dioxygenase (EC 1.13.11.51) from Stylosanthes guianensis

27% id,
75% cov

Q70KY0: 9-cis-epoxycarotenoid dioxygenase (EC 1.13.11.51) from Arachis hypogaea

27% id,
75% cov

More...

CCNA_01156: sulfotransferase family protein
is similar to:
PaperBLAST

MNLOX_COLGC / T0JRM4: Manganese lipoxygenase; MnLOX; Manganese 9S/11S-lipoxygenase; 9S/11S-MnLOX; EC 1.13.11.-; EC 1.13.11.45; EC 1.13.11.58 from Colletotrichum gloeosporioides

35% id,
8% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory