Curated BLAST for Genomes

 

Curated BLAST

Searching in Caulobacter crescentus NA1000 (Caulo)

Found 8 curated entries in PaperBLAST's database that match '1.13.12.2' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Caulobacter crescentus NA1000, or try another query

CCNA_02883: flavin containing amine oxidoreductase
is similar to:
PaperBLAST

Pf1N1B4_2505: Lysine 2-monooxygenase (EC 1.13.12.2) from Pseudomonas fluorescens

28% id,
27% cov

PfGW456L13_1171: Lysine 2-monooxygenase (EC 1.13.12.2) from Pseudomonas fluorescens

27% id,
27% cov

AO353_07420: Lysine 2-monooxygenase (EC 1.13.12.2) from Pseudomonas fluorescens

27% id,
27% cov

More...

CCNA_01145: monoamine oxidase
is similar to:
PaperBLAST

Q88QV1: lysine 2-monooxygenase (EC 1.13.12.2) from Pseudomonas putida

29% id,
25% cov

davB / B3IVI6: L-lysine monooxygenase monomer (EC 1.13.12.2) from Pseudomonas putida

29% id,
25% cov

AO353_07420: Lysine 2-monooxygenase (EC 1.13.12.2) from Pseudomonas fluorescens

31% id,
16% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory