Curated BLAST for Genomes

 

Curated BLAST

Searching in Caulobacter crescentus NA1000 (Caulo)

Found 35 curated entries in PaperBLAST's database that match '2.3.3.9' as complete word(s).

These curated entries have 22 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Caulobacter crescentus NA1000, or try another query

CCNA_01843: malate synthase
is similar to:
PaperBLAST

Mas / b4014: malate synthase A (EC 2.3.3.9) from Escherichia coli
aceB / P08997: malate synthase A (EC 2.3.3.9) from Escherichia coli

54% id,
98% cov

BPHYT_RS12305: Malate synthase (EC 2.3.3.9) from Burkholderia phytofirmans

53% id,
98% cov

Q9ZH77: malate synthase (EC 2.3.3.9) from Streptomyces clavuligerus

52% id,
98% cov

More...

CCNA_01841: isocitrate lyase
is similar to:
PaperBLAST

GCP_CAEEL / Q10663: Bifunctional glyoxylate cycle protein; Gex-3-interacting protein 7; EC 4.1.3.1; EC 2.3.3.9 from Caenorhabditis elegans

35% id,
19% cov

GCP_CAEEL / Q10663: Bifunctional glyoxylate cycle protein; Gex-3-interacting protein 7; EC 4.1.3.1; EC 2.3.3.9 from Caenorhabditis elegans

26% id,
16% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory