Curated BLAST for Genomes

 

Curated BLAST

Searching in Caulobacter crescentus NA1000 (Caulo)

Found 108 curated entries in PaperBLAST's database that match '2.4.2.2'.

These curated entries have 73 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Caulobacter crescentus NA1000, or try another query

CCNA_01659: queuine tRNA-ribosyltransferase
is similar to:
PaperBLAST

TGT_ZYMMO / P28720: Queuine tRNA-ribosyltransferase; Guanine insertion enzyme; tRNA-guanine transglycosylase; EC 2.4.2.29 from Zymomonas mobilis
P28720: tRNA-guanosine34 transglycosylase (EC 2.4.2.29) from Zymomonas mobilis

64% id,
96% cov

tgt / Q183P1: preQ1 tRNA-ribosyltransferase (EC 2.4.2.29) from Clostridioides difficile

54% id,
99% cov

TGT_ECOLI / P0A847: Queuine tRNA-ribosyltransferase; Guanine insertion enzyme; tRNA-guanine transglycosylase; EC 2.4.2.29 from Escherichia coli
Tgt: tRNA-guanine transglycosylase (EC 2.4.2.29) from Escherichia coli
tgt / P0A847: tRNA-guanine transglycosylase (EC 2.4.2.29) from Escherichia coli
P0A847: tRNA-guanosine34 transglycosylase (EC 2.4.2.29) from Escherichia coli

54% id,
97% cov

More...

CCNA_01367: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
is similar to:
PaperBLAST

cobU / P29935: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase subunit (EC 2.4.2.21) from Sinorhizobium sp.
P29935: nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) from Pseudomonas denitrificans

46% id,
93% cov

cobT / A0A0K1TPX5: nicotinate-nucleotide--5-methoxybenzimidazole phosphoribosyltransferase (EC 2.4.2.21) from Moorella thermoacetica

28% id,
83% cov

cobT / A0A1D9FP51: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) from Clostridium formicaceticum

25% id,
85% cov

More...

CCNA_00523: multicopper polyphenol oxidase
is similar to:
PaperBLAST

PURNU_ECOLI / P33644: Purine nucleoside phosphorylase YfiH; Adenosine deaminase YfiH; Polyphenol oxidase YfiH; S-methyl-5'-thioadenosine phosphorylase YfiH; EC 2.4.2.1; EC 3.5.4.4; EC 1.10.3.-; EC 2.4.2.28 from Escherichia coli

40% id,
94% cov

PURNU_UNKP / Q1EIR0: Adenosine deaminase RL5; Laccase RL5; Multicopper oxidase RL5; Polyphenol oxidase; Purine nucleoside phosphorylase RL5; S-methyl-5'-thioadenosine phosphorylase RL5; EC 3.5.4.4; EC 1.10.3.-; EC 2.4.2.1; EC 2.4.2.28 from Unknown prokaryotic

32% id,
95% cov

PURNU_BACTN / Q89ZI8: Purine nucleoside phosphorylase BT_4389; Adenosine deaminase BT_4389; S-methyl-5'-thioadenosine phosphorylase BT_4389; EC 2.4.2.1; EC 3.5.4.4; EC 2.4.2.28 from Bacteroides thetaiotaomicron

30% id,
94% cov

More...

CCNA_02297: hypoxanthine-guanine phosphoribosyltransferase
is similar to:
PaperBLAST

HGXR_TRIFO / P51900: Hypoxanthine-guanine-xanthine phosphoribosyltransferase; HGPRT; HGXPRT; HGXPRTase; EC 2.4.2.22; EC 2.4.2.8 from Tritrichomonas foetus

29% id,
97% cov

HGXR_PLAFG / P20035: Hypoxanthine-guanine-xanthine phosphoribosyltransferase; HGPRT; HGXPRT; HGXPRTase; EC 2.4.2.22; EC 2.4.2.8 from Plasmodium falciparum

26% id,
80% cov

CCNA_02953: N-acetyllactosaminide beta-1,6-N-acetylglucosaminyltransferase
is similar to:
PaperBLAST

CAC16797.1: peptide O-β-xylosyltransferase I (Xylt-1) (EC 2.4.2.26) from

32% id,
37% cov

AAT44331.1: xylosyltransferase I (XylT1) (partial) (EC 2.4.2.26) from

32% id,
36% cov

CAC16796.2: peptide O-β-xylosyltransferase II (Xylt-II) (EC 2.4.2.26) from

31% id,
35% cov

More...

CCNA_01975: anthranilate phosphoribosyltransferase
is similar to:
PaperBLAST

TYMP / P19971: thymidine phosphorylase monomer (EC 2.4.2.3; EC 2.4.2.2) from Homo sapiens

31% id,
30% cov

CCNA_00327: FMN-binding nitroreductase family enzyme
is similar to:
PaperBLAST

D7GJ95: 5,6-dimethylbenzimidazole synthase (EC 1.13.11.79); nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) from Propionibacterium freudenreichii

37% id,
10% cov

CCNA_03569: repair PSII family protein
is similar to:
PaperBLAST

XYLT1_HUMAN / Q86Y38: Xylosyltransferase 1; Peptide O-xylosyltransferase 1; Xylosyltransferase I; XT-I; XylT-I; EC 2.4.2.26 from Homo sapiens
CAD62248.1: peptide O-β-xylosyltransferase I (XT-I;XylT1;XYLT1) (EC 2.4.2.26) from
XYLT1 / Q86Y38: xylosyltransferase 1 (EC 2.4.2.26) from Homo sapiens
Q86Y38: protein xylosyltransferase (EC 2.4.2.26) from Homo sapiens

35% id,
10% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2119713-2120894 (frame +3) on NC_011916
is similar to:
PaperBLAST

TYMP / P19971: thymidine phosphorylase monomer (EC 2.4.2.3; EC 2.4.2.2) from Homo sapiens
Also see hits to annotated proteins above

30% id,
37% cov

1964854-1967010 (frame -1) on NC_011916
is similar to:
PaperBLAST

XYLT1_MOUSE / Q811B1: Xylosyltransferase 1; Peptide O-xylosyltransferase 1; Xylosyltransferase I; EC 2.4.2.26 from Mus musculus
CAD62249.1: peptide O-β-xylosyltransferase I (XT-I;Xylt1) (EC 2.4.2.26) from
Also see hits to annotated proteins above

33% id,
9% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory