Curated BLAST for Genomes

 

Curated BLAST

Searching in Caulobacter crescentus NA1000 (Caulo)

Found 24 curated entries in PaperBLAST's database that match '2.6.1.13'.

These curated entries have 17 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Caulobacter crescentus NA1000, or try another query

CCNA_02326: acetylornithine aminotransferase/succinyldiaminopimelate aminotransferase
is similar to:
PaperBLAST

OAT_BACSU / P38021: Ornithine aminotransferase; OAT; Ornithine--oxo-acid aminotransferase; EC 2.6.1.13 from Bacillus subtilis

35% id,
97% cov

Q98TS5: ornithine aminotransferase (EC 2.6.1.13) from Xenopus laevis

35% id,
94% cov

OAT_YEAST / P07991: Ornithine aminotransferase; Ornithine--oxo-acid aminotransferase; EC 2.6.1.13 from Saccharomyces cerevisiae

33% id,
100% cov

More...

CCNA_00620: acetylornithine aminotransferase/succinyldiaminopimelate aminotransferase
is similar to:
PaperBLAST

OAT_BACSU / P38021: Ornithine aminotransferase; OAT; Ornithine--oxo-acid aminotransferase; EC 2.6.1.13 from Bacillus subtilis

37% id,
92% cov

Q98TS5: ornithine aminotransferase (EC 2.6.1.13) from Xenopus laevis

39% id,
86% cov

otaA: ornithine aminotransferase; EC 2.6.1.13 from Emericella nidulans

37% id,
89% cov

More...

CCNA_03245: beta alanine-pyruvate transaminase
is similar to:
PaperBLAST

OAT_BACSU / P38021: Ornithine aminotransferase; OAT; Ornithine--oxo-acid aminotransferase; EC 2.6.1.13 from Bacillus subtilis

31% id,
93% cov

OAT_KLULA / Q6CWC1: Ornithine aminotransferase; Ornithine--oxo-acid aminotransferase; EC 2.6.1.13 from Kluyveromyces lactis

31% id,
92% cov

OAT_YEAST / P07991: Ornithine aminotransferase; Ornithine--oxo-acid aminotransferase; EC 2.6.1.13 from Saccharomyces cerevisiae

29% id,
93% cov

More...

CCNA_03233: Acetyl ornithine aminotransferase
is similar to:
PaperBLAST

ORNAT_THEKO / Q5JEW1: Ornithine aminotransferase; Orn-AT; Lysine aminotransferase; Lys-AT; EC 2.6.1.13; EC 2.6.1.36 from Thermococcus kodakarensis

32% id,
91% cov

OAT_PLAF7 / Q6LFH8: Ornithine aminotransferase; Ornithine--oxo-acid aminotransferase; EC 2.6.1.13 from Plasmodium falciparum
Q6LFH8: ornithine aminotransferase (EC 2.6.1.13) from Plasmodium falciparum

31% id,
91% cov

OAT_BACSU / P38021: Ornithine aminotransferase; OAT; Ornithine--oxo-acid aminotransferase; EC 2.6.1.13 from Bacillus subtilis

27% id,
93% cov

More...

CCNA_01648: adenosylmethionine-8-amino-7-oxononanoate
is similar to:
PaperBLAST

OAT_BACSU / P38021: Ornithine aminotransferase; OAT; Ornithine--oxo-acid aminotransferase; EC 2.6.1.13 from Bacillus subtilis

30% id,
94% cov

OAT_KLULA / Q6CWC1: Ornithine aminotransferase; Ornithine--oxo-acid aminotransferase; EC 2.6.1.13 from Kluyveromyces lactis

30% id,
91% cov

OAT_YEAST / P07991: Ornithine aminotransferase; Ornithine--oxo-acid aminotransferase; EC 2.6.1.13 from Saccharomyces cerevisiae

28% id,
94% cov

More...

CCNA_03241: glutamate-1-semialdehyde 2,1-aminomutase
is similar to:
PaperBLAST

OAT_RAT / P04182: Ornithine aminotransferase, mitochondrial; Ornithine--oxo-acid aminotransferase; EC 2.6.1.13 from Rattus norvegicus
P04182: ornithine aminotransferase (EC 2.6.1.13) from Rattus norvegicus

27% id,
96% cov

OAT_KLULA / Q6CWC1: Ornithine aminotransferase; Ornithine--oxo-acid aminotransferase; EC 2.6.1.13 from Kluyveromyces lactis

26% id,
92% cov

otaA: ornithine aminotransferase; EC 2.6.1.13 from Emericella nidulans

27% id,
89% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory