Curated BLAST for Genomes

 

Curated BLAST

Searching in Caulobacter crescentus NA1000 (Caulo)

Found 319 curated entries in PaperBLAST's database that match '3.2.1.23' as complete word(s).

These curated entries have 250 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Caulobacter crescentus NA1000, or try another query

CCNA_00830: beta-galactosidase
is similar to:
PaperBLAST

ABA39423.1: β-galactosidase (GalD) (EC 3.2.1.23)

59% id,
89% cov

ACL41086.1: β-galactosidase (Achl_3125) (EC 3.2.1.23)

22% id,
45% cov

BGAL_XANMN / P48982: Beta-galactosidase; Lactase; EC 3.2.1.23 from Xanthomonas manihotis
AAC41485.1: β-galactosidase (BGA;BgaX) (EC 3.2.1.23)

27% id,
30% cov

More...

CCNA_02220: beta-glucosidase
is similar to:
PaperBLAST

ABI35984.1: β-glycosidase (β-gly) (EC 3.2.1.21|3.2.1.23)

45% id,
99% cov

ACL74759.1: cellodextrin glucohydrolase (Ccel_0374) (EC 3.2.1.21|3.2.1.23|3.2.1.74)

36% id,
98% cov

AEQ38581.1: β-galactosidase (Mbgl) (EC 3.2.1.23)

36% id,
96% cov

More...

CCNA_02891: beta-galactosidase
is similar to:
PaperBLAST

ABA39423.1: β-galactosidase (GalD) (EC 3.2.1.23)

37% id,
96% cov

BGAL_CLOC7 / D9SM34: Beta-galactosidase BgaA; Beta-gal; Alpha-L-arabinopyranosidase; EC 3.2.1.23 from Clostridium cellulovorans
AAN05452.1: β-galactosidase / α-L-arabinopyranosidase (BgaA) (EC 3.2.1.23|3.2.1.-)

27% id,
20% cov

CCNA_01019: beta-glucosidase
is similar to:
PaperBLAST

ADT80794.1: α-L-arabinopyranosidase / β-galactosidase (Apy;Apy-H1) (EC 3.2.1.23|3.2.1.-)

34% id,
86% cov

CCNA_01832: beta-glucosidase
is similar to:
PaperBLAST

ADT80794.1: α-L-arabinopyranosidase / β-galactosidase (Apy;Apy-H1) (EC 3.2.1.23|3.2.1.-)

32% id,
89% cov

CCNA_03149: beta-glucosidase/beta-xylosidase
is similar to:
PaperBLAST

ADT80794.1: α-L-arabinopyranosidase / β-galactosidase (Apy;Apy-H1) (EC 3.2.1.23|3.2.1.-)

32% id,
86% cov

CCNA_01162: beta-D-glucoside glucohydrolase
is similar to:
PaperBLAST

ADT80794.1: α-L-arabinopyranosidase / β-galactosidase (Apy;Apy-H1) (EC 3.2.1.23|3.2.1.-)

29% id,
79% cov

CCNA_00586: LytR/AlgR-family transcriptional regulator
is similar to:
PaperBLAST

BGAL6_ORYSJ / Q10NX8: Beta-galactosidase 6; Lactase 6; EC 3.2.1.23 from Oryza sativa

27% id,
11% cov

AAC25984.1: β-galactosidase II / β-galactosidase 4 / exo-β-1,4-galactanase (Tbg4;TBG4) (EC 3.2.1.23)

29% id,
10% cov

AAK40304.1: β-galactosidase (Pbg1;Bg1) (EC 3.2.1.23)

28% id,
10% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 9 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

614421-615989 (frame -2) on NC_011916
is similar to:
PaperBLAST

CAA10173.1: β-galactosidase 3 / (Tbg3) (EC 3.2.1.23)
Also see hits to annotated proteins above

31% id,
10% cov

BGAL1_ARATH / Q9SCW1: Beta-galactosidase 1; Lactase 1; EC 3.2.1.23 from Arabidopsis thaliana
BAB01923.1: β-galactosidase (Bgal1;Gal-1;At3g13750) (EC 3.2.1.23)
Also see hits to annotated proteins above

31% id,
10% cov

AAA62324.1: β-galactosidase (EC 3.2.1.23)
Also see hits to annotated proteins above

25% id,
12% cov

More...

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory