Curated BLAST for Genomes

 

Curated BLAST

Searching in Caulobacter crescentus NA1000 (Caulo)

Found 8 curated entries in PaperBLAST's database that match '3.5.1.30' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Caulobacter crescentus NA1000, or try another query

CCNA_00871: carbon-nitrogen hydrolase family protein
is similar to:
PaperBLAST

Pf6N2E2_4777: 5-aminopentanamidase (EC 3.5.1.30) from Pseudomonas fluorescens

33% id,
96% cov

AO356_14225: 5-aminopentanamidase (EC 3.5.1.30) from Pseudomonas fluorescens

33% id,
96% cov

PfGW456L13_1170: 5-aminopentanamidase (EC 3.5.1.30) from Pseudomonas fluorescens

31% id,
96% cov

More...

CCNA_00212: N-carbamoylputrescine amidase
is similar to:
PaperBLAST

AO353_07425: 5-aminopentanamidase (EC 3.5.1.30) from Pseudomonas fluorescens

30% id,
95% cov

Pf1N1B4_2504: 5-aminopentanamidase (EC 3.5.1.30) from Pseudomonas fluorescens

30% id,
95% cov

Pf6N2E2_4777: 5-aminopentanamidase (EC 3.5.1.30) from Pseudomonas fluorescens

29% id,
94% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory